View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9541_low_3 (Length: 395)
Name: NF9541_low_3
Description: NF9541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9541_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 43091238 - 43091052
Alignment:
| Q |
1 |
taggtagtagtagggtgttggagatggaaaaaggaacaatgttgattcatctaaaaagctatcttttattggttcagctttaatgcataaaagtaacaga |
100 |
Q |
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| T |
43091238 |
taggtagtagtagggtgttggagatggaaaaaggaacaatgttgattcatctaaaaagctatcttttattggttcagctttaatgcataaaagtaacaga |
43091139 |
T |
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| Q |
101 |
accatattcagaagaaagaaagatgaattattcgatttctttttacgagtcacacaatcacaaactgtttctttgatttagggagtt |
187 |
Q |
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| T |
43091138 |
accatattcagaagaaagaaagatgaattattcgatttctttttacgagtcacacaatcacaaactttttctttgatttagggagtt |
43091052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 188 - 376
Target Start/End: Complemental strand, 43090992 - 43090799
Alignment:
| Q |
188 |
atacacacacattgaagaaatttagcagaagaagaagttgatatatttgttataactataagggaagggaagattaactaggaatgcattcaagagtgtg |
287 |
Q |
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| T |
43090992 |
atacacacacattgaagaaatttagcagaagaagaagttgatatatttgttataactataagggatgggaagattaactaggaatgcattcaagagtgtg |
43090893 |
T |
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| Q |
288 |
tcagatattttaggacac-----tgaagtatctatcttttttaaggacaagtcgctcatagggagggacagatgaatgaatgaacattgaacat |
376 |
Q |
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| T |
43090892 |
tcagatattttaggacactgaactgaagtatctatcttttttaaggacaagtcgctcatagggagggacagatgaatgaatgaacattgaacat |
43090799 |
T |
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