View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9541_low_5 (Length: 375)
Name: NF9541_low_5
Description: NF9541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9541_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 3800866 - 3801221
Alignment:
| Q |
20 |
aataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatc |
119 |
Q |
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| T |
3800866 |
aataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtgtatc |
3800965 |
T |
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| Q |
120 |
aagtagttggtgatgatgacataaaggcaatgcgtttgaaaatgaagaaaatgactattaataatatagaagaaggtggccagtcatcacataatctcca |
219 |
Q |
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| T |
3800966 |
aagtagttggtgatgatgacataaaggcaatgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatcacataatctcca |
3801065 |
T |
|
| Q |
220 |
aaagtttattacttgggcgaattattaatgtatttataatctattacttgttgttttgaattagtgctgttctcttttt--tctttgtatatatgttcat |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |
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| T |
3801066 |
aaagtttattacttgggcgaattattaatgtgtttataatctattacttgttgttttgaattagtgttgttctcttttttctctttctatatatgttcac |
3801165 |
T |
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| Q |
318 |
ggacacttctcggattagatgtgttctggtcttggacacacgacaccacacctatg |
373 |
Q |
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|| |||||||| ||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
3801166 |
agatacttctcgaattagatgtgttctggtctcggacacacgacaccacacttatg |
3801221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 3789241 - 3788968
Alignment:
| Q |
20 |
aataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
3789241 |
aataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaagaagaaggtggatc |
3789142 |
T |
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| Q |
120 |
aagtagttggtgatgatgacataaaggcaatgcgtttgaaaatgaagaaaatgactattaataatatagaagaaggtggccagtcatcacataatctcca |
219 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
3789141 |
aagtagttggtgatgatgacataaaggaaatgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatcacataatcttca |
3789042 |
T |
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| Q |
220 |
aaagtttattacttgggcgaattattaatgtatttataatctatta---cttgttgttttgaattagtgctgtt |
290 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
3789041 |
aaagtttattagttgggcgaattattaatgtttttataatctattatttcttgttgttttgaattagtggtgtt |
3788968 |
T |
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