View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9541_low_9 (Length: 237)
Name: NF9541_low_9
Description: NF9541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9541_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 50594632 - 50594408
Alignment:
| Q |
1 |
gtgtatcatcaaattggtaatactcacccaatataggcttcattgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50594632 |
gtgtatcgtcaaattggtaatactcacccaatataggcttcattgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagc |
50594533 |
T |
|
| Q |
101 |
cacatgagtatcagtgatgtgatgaaacactttgtttaaaatcccataatctctatccacagttgccaaagctcctcttaaccaatcccattcttttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50594532 |
cacatgagtatcagtgatgtgatgaaacactttgattaaaatcccataatctctatccacagttgccaaagctcctctcaaccaatcccattcttttgaa |
50594433 |
T |
|
| Q |
201 |
tcataatgaggcaaagaaaaatgtg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
50594432 |
tcataatgaggcaaagaaaaatgtg |
50594408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 23031847 - 23031638
Alignment:
| Q |
7 |
catcaaattggtaatactcacccaatataggcttcattgctttggttgcttccatcgcatggtaatgtggcattgtggaaaagatatgatgagccacatg |
106 |
Q |
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||||||| || ||||| |||||||| ||||| |||| ||||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||| ||||||| |
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| T |
23031847 |
catcaaaatgataatattcacccaaaataggtttcacacctttggtagcttccattgcatgataatgaggcatagttgaaaacatatgatgaaccacatg |
23031748 |
T |
|
| Q |
107 |
agtatcagtgatgtgatgaaacactttgtttaaaatcccataatctctatccacagttgccaaagctcctcttaaccaatcccattcttttgaatcataa |
206 |
Q |
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||||||||| |||| |||||| ||||| || | ||| ||||||||||||||||||||||||||||| ||||| | |||||||||||| | ||||||||| |
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| T |
23031747 |
agtatcagttatgttatgaaaaactttattaagaattccataatctctatccacagttgccaaagcacctctcatccaatcccattcagtagaatcataa |
23031648 |
T |
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| Q |
207 |
tgaggcaaag |
216 |
Q |
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|||||||||| |
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| T |
23031647 |
tgaggcaaag |
23031638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 1897230 - 1897191
Alignment:
| Q |
2 |
tgtatcatcaaattggtaatactcacccaatataggcttc |
41 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
1897230 |
tgtatcatcaaattggtaatactcacccagtatagacttc |
1897191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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