View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9542_1 (Length: 621)
Name: NF9542_1
Description: NF9542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9542_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 30 - 569
Target Start/End: Original strand, 1743491 - 1744035
Alignment:
| Q |
30 |
aatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaat |
129 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |
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| T |
1743491 |
aatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggctatcgcgaagagatccaacgttcgagcaaat |
1743590 |
T |
|
| Q |
130 |
caaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaaccca |
229 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1743591 |
caaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatcaaggtccaaccca |
1743690 |
T |
|
| Q |
230 |
gattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaagga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
1743691 |
gattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatggctttgagccttaaaaatctcgagagtagccgagaaagga |
1743790 |
T |
|
| Q |
330 |
ataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagaccatagaaacagactccaaatcatgtcc |
429 |
Q |
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||| || |||||||||||||||||||| ||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
1743791 |
atagaatagtggaatcatgtattgttaaagaaaatttcacttggtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatcttttcc |
1743890 |
T |
|
| Q |
430 |
ttggtcaaggagtttgaagattgattcccaacattcttgtggaaaatctttcaccaacatatttgatataat-----ttgatctagaaagttaagatgag |
524 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1743891 |
ttggccaaggaatttgaagattgattcccaacattcttgaggaaaatctttcaataacatatttgatataataaatgttgatctagaaagttaagatgag |
1743990 |
T |
|
| Q |
525 |
aatgatcaacaaatgtaatggcttaatcatttatcaactcaataa |
569 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
1743991 |
aatgatcaacaaatttaatggcttaatcatttataaactcaataa |
1744035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 499
Target Start/End: Complemental strand, 2006891 - 2006422
Alignment:
| Q |
30 |
aatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaat |
129 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2006891 |
aatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggctatcgcaaagagagccaatgtttgagcaaat |
2006792 |
T |
|
| Q |
130 |
caaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaaccca |
229 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||| |||| |
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|
| T |
2006791 |
caaaaccctcaggtttatcatctttgaaccgagctctcgcaatccatcaacaggaactgttctctggttggaaagattaacgaaatcaaggtccagccca |
2006692 |
T |
|
| Q |
230 |
gattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaagga |
329 |
Q |
| |
|
|||||||||| ||||||||| | | |||| ||||||||||||||||| |||||||||| ||||||||| |||||||||| | |||||||||||| ||||| |
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|
| T |
2006691 |
gattgtgaaacttgatgaagcaagccttcaagttcaccattgaagtggctaaaatctaagactttgagccttaaaaatcccaagagtagccgaggaagga |
2006592 |
T |
|
| Q |
330 |
ataaaacagtggaatcatgtattgttagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagaccatagaaacagactccaaatcatgtcc |
429 |
Q |
| |
|
|| |||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2006591 |
atggaacagtgggatcatgtactgttagagatgctttaactcggtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatcatctcc |
2006492 |
T |
|
| Q |
430 |
ttggtcaaggagtttgaagattgattcccaacattcttgtggaaaatctttcaccaacatatttgatata |
499 |
Q |
| |
|
|||| |||||| | | ||||||||||||||||||||||| |||||||||||||| || |||||||||||| |
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|
| T |
2006491 |
ttggccaaggaatcttaagattgattcccaacattcttgaggaaaatctttcactaatatatttgatata |
2006422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 592
Target Start/End: Original strand, 1749110 - 1749187
Alignment:
| Q |
514 |
gttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataaaccaatcatatttgagtgaaagt |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | | |||||| |||||| || |||| ||||||||| |
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|
| T |
1749110 |
gttaagatgagaatgatcaacaaatgtaatggcttaataatttcttagctcaatgaaccaaccacattt-agtgaaagt |
1749187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 1498419 - 1498323
Alignment:
| Q |
201 |
aaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgag |
297 |
Q |
| |
|
||||||||| ||||| |||||||| | ||||| | ||||||||||||| | | ||||||||| ||| ||||||| |||| |||||||||||||| |
|
|
| T |
1498419 |
aaagattaaccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctatgactttgag |
1498323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
162 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
202 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 44577603 - 44577538
Alignment:
| Q |
211 |
caaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
276 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||| |
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|
| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
44577538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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