View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9542_2 (Length: 572)
Name: NF9542_2
Description: NF9542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9542_2 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 1743160 - 1743708
Alignment:
| Q |
1 |
aaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtattcttttctttt |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
1743160 |
aaatcaatagcatttaatcttttcaagctcacgaatgaatcgatcaaatccaagttaataggtaagggagtcaaaccaggtccatgtattcttttctttt |
1743259 |
T |
|
| Q |
101 |
caatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaagaatgaaatttcttc |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
1743260 |
cgatgttaaaagaaatggaagacaaacttggcctcattcggatagcagaagcaattccatcttgggatatcttgaagcattggaagaatgaaatttcttc |
1743359 |
T |
|
| Q |
201 |
caatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatcgatcctgcgcagattctcaagcatggaagat |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
1743360 |
caatgatctgcagttctggcatagagacaaaagagatttatcagtgatcaagtgattaccagaaagatcgatcttgcacagattctcaagcatggaagac |
1743459 |
T |
|
| Q |
301 |
agccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
1743460 |
agccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggc |
1743559 |
T |
|
| Q |
401 |
tatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggtt |
500 |
Q |
| |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743560 |
tatcgcgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggtt |
1743659 |
T |
|
| Q |
501 |
ggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatga |
549 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1743660 |
ggaaagattaatcaaatcaaggtccaacccagattgtgaaatttgatga |
1743708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 2007222 - 2006674
Alignment:
| Q |
1 |
aaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtattcttttctttt |
100 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2007222 |
aaatcaatagcttttaatctcttcaagctcacgaatgaatcgatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtcttcttttctttt |
2007123 |
T |
|
| Q |
101 |
caatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaagaatgaaatttcttc |
200 |
Q |
| |
|
|||||||||| || || |||| |||||||||| |||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
2007122 |
caatgttaaaggatatcgaagccaaacttggcatcattcggatcgcagaagcaattccaacttgggatattttgaaacattggaagaataaaatttcttc |
2007023 |
T |
|
| Q |
201 |
caatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccggaaagatcgatcctgcgcagattctcaagcatggaagat |
300 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| |||||||| || | ||||||||||| |||||||| || ||||||||||||| |||||||||||| |
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| T |
2007022 |
cagtgatctacagttctggcatagagacaaaagggatttatcggtggttaagtgattaccagaaagatcaattttgcgcagattctcgagcatggaagat |
2006923 |
T |
|
| Q |
301 |
agccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggc |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
2006922 |
taccttattaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggc |
2006823 |
T |
|
| Q |
401 |
tatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggtt |
500 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||| |
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|
| T |
2006822 |
tatcgcaaagagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccgagctctcgcaatccatcaacaggaactgttctctggtt |
2006723 |
T |
|
| Q |
501 |
ggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatga |
549 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||||| ||||||| |
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|
| T |
2006722 |
ggaaagattaacgaaatcaaggtccagcccagattgtgaaacttgatga |
2006674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 1498639 - 1498475
Alignment:
| Q |
32 |
cgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccaggtccatgtattcttttcttttcaatgttaaaagaaatggaagacaaacttgg |
131 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||| || |
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|
| T |
1498639 |
cgaatgagtcagtcaaatccaatttaataggtaggggtttcaatccaggtccatgtagtcttttcttttcaacgttaaaagaaatggaacccaaactagg |
1498540 |
T |
|
| Q |
132 |
cctcattcggatagcaaaagcaattccagcttgggatatcttgaaacattggaagaatgaaattt |
196 |
Q |
| |
|
| ||| ||| ||| || ||| ||| |||||| |||||| |||||| |||||||||||||| |
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|
| T |
1498539 |
aattattttgattgcacaaacaaggccaacttgggttatcttaaaacatgtgaagaatgaaattt |
1498475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 374024 - 373967
Alignment:
| Q |
2 |
aatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaat |
59 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||| | ||||||| ||||||||| |
|
|
| T |
374024 |
aatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaat |
373967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
464 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
504 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 549
Target Start/End: Complemental strand, 44577603 - 44577567
Alignment:
| Q |
513 |
caaatctaggtccaacccagattgtgaaatttgatga |
549 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatga |
44577567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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