View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9542_4 (Length: 458)

Name: NF9542_4
Description: NF9542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9542_4
NF9542_4
[»] chr6 (4 HSPs)
chr6 (1-156)||(28656757-28656912)
chr6 (267-315)||(28656464-28656513)
chr6 (160-191)||(28656641-28656672)
chr6 (400-429)||(34595090-34595119)
[»] chr3 (2 HSPs)
chr3 (390-429)||(13414423-13414462)
chr3 (400-428)||(41961725-41961753)
[»] scaffold0003 (1 HSPs)
scaffold0003 (398-429)||(241548-241579)
[»] chr7 (2 HSPs)
chr7 (66-145)||(43837105-43837183)
chr7 (400-429)||(38804617-38804646)
[»] chr1 (2 HSPs)
chr1 (400-429)||(12242517-12242546)
chr1 (159-187)||(15578668-15578696)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 28656912 - 28656757
Alignment:
Q  1 taggcatgtctccgtctccgacacgtgttgtgtctgacactcattcaacacgtgtccattaattcagacaagtgtcccgaaaaatatcattttttctttg 100  Q
    ||||||||||||  ||||| |||   ||||||| ||||||||  || |||||||||||  |||||||||||||||||| || ||||||||||||||||||    
T  28656912 taggcatgtctctatctccaacattcgttgtgtttgacactccgtcgacacgtgtccaacaattcagacaagtgtcccaaacaatatcattttttctttg 28656813  T
Q  101 ctttaacacaccgtaaacacttcttggatacatctcagacacatctatggaagttt 156  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||| | ||||||    
T  28656812 ctttgacacaccgtaaacactccttggacacatctcagacacatctacgaaagttt 28656757  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 28656513 - 28656464
Alignment:
Q  267 tgtcaggtgt-gcttcatagatcacaacactcgctccctaataccactcc 315  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28656513 tgtcaggtgttgcttcatagatcacaacactccctccctaataccactcc 28656464  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 191
Target Start/End: Complemental strand, 28656672 - 28656641
Alignment:
Q  160 gatgaatgaagatgaaagactatcatatcatg 191  Q
    ||||||||||||||||||||||||||||||||    
T  28656672 gatgaatgaagatgaaagactatcatatcatg 28656641  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 429
Target Start/End: Original strand, 34595090 - 34595119
Alignment:
Q  400 ctatgaagcacggacaccggacacgacacg 429  Q
    ||||||||||||||||||||||||||||||    
T  34595090 ctatgaagcacggacaccggacacgacacg 34595119  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 429
Target Start/End: Original strand, 13414423 - 13414462
Alignment:
Q  390 tgatgaatatctatgaagcacggacaccggacacgacacg 429  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  13414423 tgatgaatatctatgaagcacggacaccagacacgacacg 13414462  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 428
Target Start/End: Complemental strand, 41961753 - 41961725
Alignment:
Q  400 ctatgaagcacggacaccggacacgacac 428  Q
    |||||||||||||||||||||||||||||    
T  41961753 ctatgaagcacggacaccggacacgacac 41961725  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 429
Target Start/End: Original strand, 241548 - 241579
Alignment:
Q  398 atctatgaagcacggacaccggacacgacacg 429  Q
    ||||||||||||||||||||||||||||||||    
T  241548 atctatgaagcacggacaccggacacgacacg 241579  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 43837105 - 43837183
Alignment:
Q  66 agacaagtgtcccgaaaaatatcattttttctttgctttaacacaccgtaaacacttcttggatacatctcagacacatc 145  Q
    |||||||| ||||  ||||||| ||||||||||||||| |||||||| || || || ||||||| ||||||| |||||||    
T  43837105 agacaagtatcccagaaaatat-attttttctttgcttcaacacaccttatactctccttggatgcatctcaaacacatc 43837183  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 429
Target Start/End: Complemental strand, 38804646 - 38804617
Alignment:
Q  400 ctatgaagcacggacaccggacacgacacg 429  Q
    ||||||||||||||||||||||||||||||    
T  38804646 ctatgaagcacggacaccggacacgacacg 38804617  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 429
Target Start/End: Original strand, 12242517 - 12242546
Alignment:
Q  400 ctatgaagcacggacaccggacacgacacg 429  Q
    ||||||||||||||||||||||||||||||    
T  12242517 ctatgaagcacggacaccggacacgacacg 12242546  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 15578668 - 15578696
Alignment:
Q  159 agatgaatgaagatgaaagactatcatat 187  Q
    |||||||||||||||||||||||||||||    
T  15578668 agatgaatgaagatgaaagactatcatat 15578696  T

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