View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9542_5 (Length: 422)
Name: NF9542_5
Description: NF9542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9542_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 4 - 422
Target Start/End: Complemental strand, 33203664 - 33203246
Alignment:
| Q |
4 |
atgaaacgcggcacggtgtaacggtttaccggttggagatcgtagccgttgattcagccgctctaatattgcttgagctagttgaagatgattgttatcg |
103 |
Q |
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| T |
33203664 |
atgaaacgcggcacggtgtaatggtttaccggttggagatcgtagccgttgattcagccgctctaatattgcttgagctagttgaagatgattgttatcg |
33203565 |
T |
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| Q |
104 |
aaacaatcagcggcacgaataagctcttcaatgaaatcccagttgctattggtgttgttgtttggttggttattattgaaatcattaactaaatgatcca |
203 |
Q |
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| T |
33203564 |
aaacaatcagcggcacgaataagctcttcaatgaaatcccagttgctattggtgttgttgtttggttggttattattgaaatcattaactaaatgatcca |
33203465 |
T |
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| Q |
204 |
gattagtgtttgtgttagggtaattataagccaggttttggttattagagtaaatatctgacagagaagtgaagtcttgagtttgatcaaattgatcttg |
303 |
Q |
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| T |
33203464 |
gattagtgtttgtgttagggtaattataagccaggttttggttattagagtaaatatctgacagagaagtgaagtcttgagtttgatcaaattgatcttg |
33203365 |
T |
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| Q |
304 |
agaagggttagggtaaatttctgaggtattattggtgtttttcaagaggggtattatgggagttgaagagtcgtcttgtaaacctaaatctttcatgatg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33203364 |
agaagggttagggtaaatttctgaggtattattggtgtttttcaagaggggtattatgggagttgaagagtcgtcttgtaaacctaaatctttcatgatg |
33203265 |
T |
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| Q |
404 |
gaatcccaccaatccaaat |
422 |
Q |
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| T |
33203264 |
gaatcccaccaatccaaat |
33203246 |
T |
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