View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9542_7 (Length: 353)
Name: NF9542_7
Description: NF9542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9542_7 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 39717192 - 39717517
Alignment:
| Q |
12 |
atgtgatggataaacttacagagatatgacatgtccatttctacaagtgacatgtgaccagctgaaacatgggctcactaaatgactatcccaatcttgt |
111 |
Q |
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| T |
39717192 |
atgtgatagataaacttacagagatatgacatgtccatttctacaagtgacatgtgaccagctgaaacatgggctcactaaatgactatcccaatcttgt |
39717291 |
T |
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| Q |
112 |
atttgattatttgaatcattgaggtaattcaaaagatcaagcagagcttcacctggaaatattagaccaaatgtttcataatcattaagagtgtt----- |
206 |
Q |
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| T |
39717292 |
atttgattatttgaatcattgaggtaattcaaaagatcaagcagagcttcacctggaaatattagaccaaatgtttcagaatcattaagagtgttgatat |
39717391 |
T |
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| Q |
207 |
--------gaattgtcaaataagaaggatttaagttatgcacaaagtagagaataacaagctaaaacttttggtatgtgggaaaacaataactctactaa |
298 |
Q |
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| T |
39717392 |
ataatagagaattgtcaaataagaaggatttaagttatgcacaaagtagagaataacaagctaaaacttttggtatgtgggaaaacaataactctactaa |
39717491 |
T |
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| Q |
299 |
agtagtaattttcaaacctataacat |
324 |
Q |
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| T |
39717492 |
agtagtaattttcaaaactataacat |
39717517 |
T |
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