View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9542_low_2 (Length: 240)
Name: NF9542_low_2
Description: NF9542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9542_low_2 |
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| [»] chr4 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 48957783 - 48958005
Alignment:
| Q |
18 |
acttttgcgtgacatataatgagaaataatttagaaaaactaagacagtggtgggtatttgaattaatcaagtgtcttgcaatttctcatttgtttaaga |
117 |
Q |
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| T |
48957783 |
acttttgcgtgacatataatgagaaataatttagaaaaactaagacagtggtgggtatttgaattaatcaagtgtcttgcagtttctcatttgtttaaga |
48957882 |
T |
|
| Q |
118 |
tcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttgatttcct |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48957883 |
tcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttgatttcct |
48957982 |
T |
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| Q |
218 |
cagcttcatcaccaccgtccatc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
48957983 |
cagcttcatcaccaccgtccatc |
48958005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 48965065 - 48965190
Alignment:
| Q |
115 |
agatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttgattt |
214 |
Q |
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|||||||||||||| | |||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| |||||||||||||| | | |||| |
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| T |
48965065 |
agatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgagcacgacttctaattt |
48965164 |
T |
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| Q |
215 |
cctcagcttcatcaccaccgtccatc |
240 |
Q |
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||||||||||||||||| ||||||| |
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| T |
48965165 |
tctcagcttcatcaccactgtccatc |
48965190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 48961023 - 48961151
Alignment:
| Q |
111 |
tttaagatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttg |
210 |
Q |
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||||||||||||||| |||| ||||||||| |||||||| || || ||| ||||||||||| | ||||||| || || |||||| |||||||| || | |
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| T |
48961023 |
tttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcgagcacgccgtctt |
48961122 |
T |
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| Q |
211 |
atttcctcagcttcatcaccaccgtccat |
239 |
Q |
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|| || || |||||||||||||||||||| |
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| T |
48961123 |
atatcttcggcttcatcaccaccgtccat |
48961151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 48967181 - 48967306
Alignment:
| Q |
102 |
tctcatttgtttaagatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagca |
201 |
Q |
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||||||| |||||||||||||||||||| | ||||| |||| |||| | ||||||||||||| ||| |||||||||||||||| || ||| ||||| |
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| T |
48967181 |
tctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcgagca |
48967280 |
T |
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| Q |
202 |
cgctgtttgatttcctcagcttcatc |
227 |
Q |
| |
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|| ||| |||| | |||||||||||| |
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| T |
48967281 |
cgttgtctgatcttctcagcttcatc |
48967306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 48912759 - 48912663
Alignment:
| Q |
144 |
atgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatc |
240 |
Q |
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|||||| || |||||||||| || || ||| |||| || || || |||||| ||||| | ||| |||||| ||||||||||||||||| ||||||| |
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| T |
48912759 |
atgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatc |
48912663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 12641928 - 12641799
Alignment:
| Q |
111 |
tttaagatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttg |
210 |
Q |
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||||||||| | |||||||| ||||||||||||||||||||| || ||||||| |||||| ||||||||||||| || |||||||||||||| ||| || |
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| T |
12641928 |
tttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttgagcacgttgtctg |
12641829 |
T |
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| Q |
211 |
atttcctcagcttcatcaccaccgtccatc |
240 |
Q |
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||||||| ||||||||||||| |||||||| |
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| T |
12641828 |
atttccttagcttcatcaccatcgtccatc |
12641799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 13448095 - 13448224
Alignment:
| Q |
111 |
tttaagatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttg |
210 |
Q |
| |
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|||||| || |||||||||| ||||||||| |||| |||||| ||||||||||||| ||||||| |||| |||||||| |||||| ||||||| | || |
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| T |
13448095 |
tttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctg |
13448194 |
T |
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| Q |
211 |
atttcctcagcttcatcaccaccgtccatc |
240 |
Q |
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|| | |||||||||||||||||||||||| |
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| T |
13448195 |
atattttcagcttcatcaccaccgtccatc |
13448224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 13439932 - 13440022
Alignment:
| Q |
111 |
tttaagatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagca |
201 |
Q |
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|
|||||| || ||||| |||| ||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
13439932 |
tttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttgagca |
13440022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 13454566 - 13454658
Alignment:
| Q |
111 |
tttaagatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacg |
203 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| |||| ||| || ||||||| ||||| ||||||||||||||||||||| |||||| ||||||| |
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| T |
13454566 |
tttaagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactctcgagcacg |
13454658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 28385088 - 28385195
Alignment:
| Q |
133 |
aacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccac |
232 |
Q |
| |
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|||||||| |||| ||| || |||||||||| ||||||| |||||||||| ||||| |||||| ||||||| ||| | || | ||||||||||| |||| |
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| T |
28385088 |
aacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccac |
28385187 |
T |
|
| Q |
233 |
cgtccatc |
240 |
Q |
| |
|
|||||||| |
|
|
| T |
28385188 |
cgtccatc |
28385195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 12540430 - 12540494
Alignment:
| Q |
124 |
atcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctcc |
188 |
Q |
| |
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|||||||| |||||||| |||||||| || |||||||||||||||||| || ||||||| ||||| |
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| T |
12540430 |
atcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctcc |
12540494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 12483953 - 12483805
Alignment:
| Q |
72 |
gtatttgaattaatcaagtgtcttgca-atttctc---atttgtttaagatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaac |
167 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| || | |||||||||||||| ||| ||||||||||| |||| ||| || ||||||| ||| || |
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| T |
12483953 |
gtatttgaattaatcaagtgtcttgcggatgtctctccatct-tttaagatcatcaaccaatgacaacaaattattattagaggagccaccttgttgcac |
12483855 |
T |
|
| Q |
168 |
agcttgtgtagccttttctccgaactcttgagcacgctgtttgatttcct |
217 |
Q |
| |
|
||| || |||||||||| || | ||| ||||||| ||| ||||||||| |
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|
| T |
12483854 |
ggctagtctagccttttcccccagttctcgagcacgttgtctgatttcct |
12483805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 12590594 - 12590502
Alignment:
| Q |
133 |
aacaaattgttatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttca |
225 |
Q |
| |
|
|||||||| |||| ||| || ||||||| |||||||||| || |||| ||||| || ||||||||| ||| || ||||||||||||||||| |
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| T |
12590594 |
aacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttca |
12590502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 6926 - 6829
Alignment:
| Q |
143 |
tatgagacgatccaccttcttgaacagcttgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatc |
240 |
Q |
| |
|
||||||| || |||||||||||| | || ||| ||||||| || || |||||| ||||| || |||||||| ||||||||| |||||||| |||||| |
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|
| T |
6926 |
tatgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatc |
6829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 3418006 - 3417882
Alignment:
| Q |
79 |
aattaatcaagtgtcttgcaatttctcatttgtttaagatcatcaatcaaagacaacaaattgttatgagacgatccaccttcttgaacagcttgtgtag |
178 |
Q |
| |
|
||||||||||||| |||||| | ||||| | |||||| || || ||||||| |||||||| | ||| || || ||||||||||||| |||| || ||| |
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|
| T |
3418006 |
aattaatcaagtggcttgcagtctctcaactttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttag |
3417907 |
T |
|
| Q |
179 |
ccttttctccgaactcttgagcacg |
203 |
Q |
| |
|
|||| ||||| | |||| ||||||| |
|
|
| T |
3417906 |
ccttctctccaagctctcgagcacg |
3417882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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