View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9543_low_1 (Length: 620)

Name: NF9543_low_1
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9543_low_1
NF9543_low_1
[»] chr6 (4 HSPs)
chr6 (122-603)||(26891631-26892128)
chr6 (68-127)||(26809595-26809654)
chr6 (174-216)||(26809733-26809775)
chr6 (61-115)||(26719542-26719596)
[»] chr8 (2 HSPs)
chr8 (448-603)||(5345953-5346107)
chr8 (439-527)||(27138399-27138487)
[»] chr7 (1 HSPs)
chr7 (554-603)||(7144648-7144697)
[»] chr2 (2 HSPs)
chr2 (484-598)||(13896817-13896931)
chr2 (484-598)||(14037434-14037548)
[»] chr4 (1 HSPs)
chr4 (550-591)||(14117103-14117144)


Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 122 - 603
Target Start/End: Original strand, 26891631 - 26892128
Alignment:
Q  122 aaacataaaaaagtttatatcatttggtattattggacgtagaaaggttttaatgttaaatatggtgtcatttggtttttgagtatttttaaaattagaa 221  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891631 aaacataaaaaagtttatatcatttgttattattggacgtagaaaggttttaatgttaaatatggtgtcatttggtttttgagtatttttaaaattagaa 26891730  T
Q  222 atccagtgatctacaggctcccattgctcgatgcgcatgaggcaatagttgatcctctagttttcttcattcttagcctcttttctgcttacaaattgtt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891731 atccagtgatctacaggctcccattgctcgatgcgcatgaggcaatagttgatcctctagttttcttcattcttagcctcttttctgcttacaaattgtt 26891830  T
Q  322 ctactttaagtctgatagttacattccttcataagacaacaatctgaattagagtcttctgctactaacgtca----------------ccttcagagtc 405  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||                |||||||||||    
T  26891831 ctactttaagtctgatagttacattccttcataagacgacaaactgaattagagtcttctgctactaacgtcatctttagatcattcatccttcagagtc 26891930  T
Q  406 ttcattccttcatatgcttctgaatgaaaagtaatcagagcattgactttttagtttacctttcttcaaatcttgccccaagccatacaagtttgtcttt 505  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||||    
T  26891931 ttcattccttcatatgcttctgaatgtaaagtaatcagagcattgactttttggtttacctctcttcaaatcctgccccaagtcatacaagtttgtcttt 26892030  T
Q  506 tgctttacatgttttcttatgcattcagaatgttgatgtttttgaactaaaacttgactttgatagtcagaatttaattttacggttctgcatacttg 603  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26892031 cgctttacacgttttcttatgcattcagaatgttgatgtttttgaactaaaacttgactttgatagtcagaatttaattttacggttctgcatacttg 26892128  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 26809595 - 26809654
Alignment:
Q  68 tgcctagtctctgcctccatcatgatgttgccttcaactcaacctttcttattcaaacat 127  Q
    |||||||||||||||||||| |||||| |||  ||||||||||||||| |||||||||||    
T  26809595 tgcctagtctctgcctccattatgatgctgctctcaactcaacctttcgtattcaaacat 26809654  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 26809733 - 26809775
Alignment:
Q  174 atgttaaatatggtgtcatttggtttttgagtatttttaaaat 216  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  26809733 atgttaaatatagtgtcatttggtttttgtgtatttttaaaat 26809775  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 26719542 - 26719596
Alignment:
Q  61 tttttgatgcctagtctctgcctccatcatgatgttgccttcaactcaacctttc 115  Q
    |||||||||||||||||||||||| || ||| || |||| ||||| |||||||||    
T  26719542 tttttgatgcctagtctctgcctcaattatgttgctgccctcaacacaacctttc 26719596  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 603
Target Start/End: Original strand, 5345953 - 5346107
Alignment:
Q  448 ttgactttttagtttacctttcttcaaatcttgccccaagccatacaagtttgtcttttgctttacatgttttcttatgcattcagaatgttgatgtttt 547  Q
    |||||||| ||||| | ||||||||||||||||  |||||   || ||| || |||||||||| | ||| |||| |||    ||||| | || |||||||    
T  5345953 ttgactttctagttgatctttcttcaaatcttgttccaagttttataagcttctcttttgcttcagatgatttcatatatgctcagagtctt-atgtttt 5346051  T
Q  548 tgaactaaaacttgactttgatagtcagaatttaattttacggttctgcatacttg 603  Q
     |||||||| ||||||||||| |||||||||||||||||| ||||  |||||||||    
T  5346052 agaactaaatcttgactttgagagtcagaatttaattttatggttacgcatacttg 5346107  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 527
Target Start/End: Original strand, 27138399 - 27138487
Alignment:
Q  439 atcagagcattgactttttagtttacctttcttcaaatcttgccccaagccatacaagtttgtcttttgctttacatgttttcttatgc 527  Q
    ||||||||||||||||| | ||| ||||||||||| ||||||  ||||| ||||| || || |||||||||| | ||| ||||||||||    
T  27138399 atcagagcattgactttctggttgacctttcttcagatcttgttccaagtcatacgagattttcttttgcttcagatgctttcttatgc 27138487  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 554 - 603
Target Start/End: Complemental strand, 7144697 - 7144648
Alignment:
Q  554 aaaacttgactttgatagtcagaatttaattttacggttctgcatacttg 603  Q
    ||||| ||||||||| ||||||||||||||| || |||||||||||||||    
T  7144697 aaaacatgactttgagagtcagaatttaattatatggttctgcatacttg 7144648  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 598
Target Start/End: Original strand, 13896817 - 13896931
Alignment:
Q  484 caagccatacaagtttgtcttttgctttacatgttttcttatgcattcagaatgttgatgtttttgaactaaaacttgactttgatagtcagaatttaat 583  Q
    |||| |||||||| || || ||||||| | ||| |||| |||||||||||| | ||||| |||  |||| |||||||||||||||  |||| ||||| ||    
T  13896817 caagtcatacaagattctcatttgcttcaaatgctttcctatgcattcagagtcttgatatttcagaacgaaaacttgactttgagtgtcaaaatttgat 13896916  T
Q  584 tttacggttctgcat 598  Q
    | ||  |||||||||    
T  13896917 tctaatgttctgcat 13896931  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 598
Target Start/End: Original strand, 14037434 - 14037548
Alignment:
Q  484 caagccatacaagtttgtcttttgctttacatgttttcttatgcattcagaatgttgatgtttttgaactaaaacttgactttgatagtcagaatttaat 583  Q
    |||| |||||||| || || ||||||| | ||| |||| |||||||||||| | ||||| |||  |||| |||||||||||||||  |||| ||||| ||    
T  14037434 caagtcatacaagattctcatttgcttcaaatgctttcctatgcattcagagtcttgatatttcagaacgaaaacttgactttgagtgtcaaaatttgat 14037533  T
Q  584 tttacggttctgcat 598  Q
    | ||  |||||||||    
T  14037534 tctaatgttctgcat 14037548  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 14117103 - 14117144
Alignment:
Q  550 aactaaaacttgactttgatagtcagaatttaattttacggt 591  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||    
T  14117103 aactaaaacttgactttgagagttagaatttaattctacggt 14117144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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