View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_10 (Length: 309)
Name: NF9543_low_10
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 5514554 - 5514852
Alignment:
| Q |
1 |
tgaagtcctcatgattcaatctcaaatccacttgaacgtgtgtaaggcctatgttatggcacaatggaatcaggttactagtttgctttgctgccattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5514554 |
tgaagtcctcatgattcaatctcaaatccacttgaacgtgtgtaaggcctatgttatggcacaatggaatcaggttactagtttgctttgctgccattat |
5514653 |
T |
|
| Q |
101 |
gccagcaattttcgccaccgtaagtacgtctcccttttccatttgattggctaataccaaatcaaacaccttctttccaagatttactttgcaaacagca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5514654 |
gccagcaattttcgccaccgtaagtacgtctcctttttccatttgattggctaataccaaatcaaacaccttctttccaagatttactttgcaaacagca |
5514753 |
T |
|
| Q |
201 |
gtggcagttctcttgctactttctttcggagacacatctaccatttgagcttcccctgaatttccagtatgagtcaattcaaaagagctttcacctatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5514754 |
gtggcagttctcttgctactttctttcggagacacatctaccatttgagcttcccctgaatttccagtatgagtcaattcaaaagagctttcacctatg |
5514852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 51731307 - 51731009
Alignment:
| Q |
1 |
tgaagtcctcatgattcaatctcaaatccacttgaacgtgtgtaaggcctatgttatggcacaatggaatcaggttactagtttgctttgctgccattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51731307 |
tgaagtcctcatgattcaatctcaaatccacttgaacgtgtgtaaggcctatgttatggcacaatggaatcaggttactagtttgctttgctgccattat |
51731208 |
T |
|
| Q |
101 |
gccagcaattttcgccaccgtaagtacgtctcccttttccatttgattggctaataccaaatcaaacaccttctttccaagatttactttgcaaacagca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51731207 |
gccagcaattttcgccaccgtaagtacgtctccattttccatttgattggctaataccaaatcaaacaccttctttccaagatttactttgcaaacagca |
51731108 |
T |
|
| Q |
201 |
gtggcagttctcttgctactttctttcggagacacatctaccatttgagcttcccctgaatttccagtatgagtcaattcaaaagagctttcacctatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51731107 |
gtggcagttctcttgctactttctttcggagacacatctaccatttgagcttcccctgaatttccagtatgagtcaattcaaaagagctttcacctatg |
51731009 |
T |
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