View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_16 (Length: 223)
Name: NF9543_low_16
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 6179094 - 6178905
Alignment:
| Q |
15 |
agacaaccatagctaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggacc |
114 |
Q |
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| T |
6179094 |
agacaaccatagcaaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggacc |
6178995 |
T |
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| Q |
115 |
aatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctgatgttcatggacttcacacgttcatcaagag |
204 |
Q |
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| T |
6178994 |
aatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctgatgttcatggacttcacacgttcatcaagag |
6178905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 6187884 - 6187699
Alignment:
| Q |
15 |
agacaaccatagctaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggacc |
114 |
Q |
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| T |
6187884 |
agacaaccatagcaaaacagatgttttccaagaactttgcccattatgacaatgtatgcttcttggaaaagataagcgaagactcggaaaagtttggacc |
6187785 |
T |
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| Q |
115 |
aatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctgatgttcatggacttcacacgttcatca |
200 |
Q |
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| T |
6187784 |
aatatatgtttgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctgatgttcacggacttcacacattcatca |
6187699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 6141037 - 6140851
Alignment:
| Q |
15 |
agacaaccatagctaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggacc |
114 |
Q |
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| T |
6141037 |
agacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggaca |
6140938 |
T |
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| Q |
115 |
aatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctgatgttcatggacttcacacgttcatcaa |
201 |
Q |
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| T |
6140937 |
aatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctgatgttcatggacttcacacattcatcaa |
6140851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 6046504 - 6046354
Alignment:
| Q |
15 |
agacaaccatagctaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggacc |
114 |
Q |
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||||||||||||| | |||||||||||| ||| ||||||| || ||||| | | ||||| ||||||| ||||| ||||| ||||||||| ||||| |
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| T |
6046504 |
agacaaccatagccagacagatgtttgcaaagcactttgcacaatatgaaagcgcttgctttatggaaaatgtaagtgaagaaatagaaaagtttggacc |
6046405 |
T |
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| Q |
115 |
aatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaattac |
165 |
Q |
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| T |
6046404 |
aaggtacatccgtaataagcttcttagtgagctgcttaagcgacaaattac |
6046354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 6087925 - 6087790
Alignment:
| Q |
15 |
agacaaccatagctaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggacc |
114 |
Q |
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||||||||||||| | ||| |||||||||||| ||||||| | ||||||| | ||||| |||||||| ||||| ||||| || ||| | |||| |
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| T |
6087925 |
agacaaccatagccagacaaatgtttgccaagcactttgcagaatatgacagcgcttgctttttggaaaatgtaagtgaagatgtagtaaaactcggact |
6087826 |
T |
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| Q |
115 |
aatatatgttcgtaatcagcttcttcgtgagctact |
150 |
Q |
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| T |
6087825 |
aatacatgttcgtaataaccttcttggtgagctact |
6087790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 6062747 - 6062699
Alignment:
| Q |
15 |
agacaaccatagctaaacagatgtttgccaagaactttgcccattatga |
63 |
Q |
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| T |
6062747 |
agacaaccatagccagacagatgtttgccaagcactttgcacaatatga |
6062699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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