View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_18 (Length: 220)
Name: NF9543_low_18
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32795440 - 32795658
Alignment:
| Q |
1 |
taaataattatcgtcgtagtatgtgttagaaaatcactgcaaaacttactaaaaagaagattaagacaaaaatggtggtttcacatgaactctgaaatgt |
100 |
Q |
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| T |
32795440 |
taaataattatcgtcgtagtatgtgttagaaaatcactgcaaaacttactaaagagaagattaagacgaaaatggtggtttcacatgaactctgaaatgt |
32795539 |
T |
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| Q |
101 |
gcgtggacgacaaactaaactttagattcggtttatccccaatcaatttatgcaaaccggatgtaaattgaaaattttgcaaatctcttttacgatatat |
200 |
Q |
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| T |
32795540 |
gtgtggacgacaaactaaactttagactctgttca-ccccaatcaatttatgcaaaccggatgtaaattgaaaattttgcaaatctcttttacgatatat |
32795638 |
T |
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| Q |
201 |
tggaatccttagcatgaatt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
32795639 |
tggaatccttagcatgaatt |
32795658 |
T |
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