View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_3 (Length: 485)
Name: NF9543_low_3
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 28146234 - 28146687
Alignment:
| Q |
18 |
acatcatatctaaagagtaaagatgatttatcaatggaaggataatcaaggattgcatatgtcccaactgagaagccattaacttgttatacaacaagta |
117 |
Q |
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| T |
28146234 |
acatcatatctaaagagcaaagatgatttatcaatggaaggataatcaaggattgcatatgtcccaactgagaagccattagcttgttacacaacaagta |
28146333 |
T |
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| Q |
118 |
ttttggaggcaatcttgctatcagtatcgatattgctaaaccttttgaatctataaattggagttttttcttaattaaagtgttaatgattatttagtaa |
217 |
Q |
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| T |
28146334 |
ttttggaggcaatcttgctatcagtatagatattgctaaaccttttgaatctataaattggagttttttcttaattaaagtgttaatgattatttagtaa |
28146433 |
T |
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| Q |
218 |
attttgaatagaatgaatattccaatggatcttcaaattactttcctaaatttgatgaatcacatttacctcatagctatcccaccttgagcaaaaagaa |
317 |
Q |
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| T |
28146434 |
attttgaatagaatgaatattccaatggatcttcaaattactttcctaaatttgatgaatcacatttacctcatagctatcccaccttgagcaaaaagaa |
28146533 |
T |
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| Q |
318 |
gatgcctaagtttcacagtttagagaatgaatcaggagaagattcccactgatgagaatcttgcagagaggggatgcagttttccttcaatgtgtaactt |
417 |
Q |
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| T |
28146534 |
gatgcctaagtttcacagtttagagaatgaatcacgagaagattcccactgatgagaatcttgcagagaagggatgcagttttccttcaatgtgtaactt |
28146633 |
T |
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| Q |
418 |
atgctgcaagcaacaagaaaatgcatctcatctattccttaattgtccctttgc |
471 |
Q |
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| T |
28146634 |
atgcttcaagcaacaagaaaatgcatctcatctattccttaatagtccctttgc |
28146687 |
T |
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