View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_4 (Length: 471)
Name: NF9543_low_4
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 11861762 - 11861362
Alignment:
| Q |
1 |
ataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11861762 |
ataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaatctaactttctgcattcagaaagaaccagtttttcaagtgaagtga |
11861663 |
T |
|
| Q |
101 |
ggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtctttcaaagttttcacgttttcagctccccatggaagggactt |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
11861662 |
ggttacctatactttctggtaaaaaagttaaaccatgacaatcataaatccttaagtctttcaaagtgttcacattttcaactccccatggaagggactt |
11861563 |
T |
|
| Q |
201 |
cagttttggaatactccttactgtaagagaacgaaggtttttcagaccctcccacttattttgagagttgtcaagatcaagttcttgacatctttcaata |
300 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| |
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| T |
11861562 |
aagttttggaatactccttaatgtaagagaacgaaggtttttcagaccctcccactcatttggatgtttgtcaagatcaagttcttgacatctttcaata |
11861463 |
T |
|
| Q |
301 |
gtgagtttttggagtgaactcgaagactggaaaccttcaggtagagaattcaacttgaaacaatctcgaatgtgaagttccggaagcgaaatgaagtttt |
400 |
Q |
| |
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|||||| |||||||||||||| |||||| |||||||| |||||||| || || |||||||||| ||||||||||||| ||| ||||||||||||| |
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| T |
11861462 |
gtgagtgtttggagtgaactcaaagacttgaaaccttgtggtagagacgctaaattaaaacaatctctaatgtgaagttcctcaagtgaaatgaagtttt |
11861363 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
|
| |
|
|
| T |
11861362 |
t |
11861362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 11829663 - 11829410
Alignment:
| Q |
1 |
ataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagtta |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
11829663 |
ataataatcaaagtatttagagactgaagcatttccattcctttgggaagagaatctaaatttctgcattcagaaagaaccagtctttcaagtgaagtga |
11829564 |
T |
|
| Q |
101 |
ggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtctttcaaagttttcacgttttcagctccccatggaagggactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11829563 |
ggttacctatactttctggtaaagaagttaaaccatgacaatcataaatcctcaagtctttcaaagttttcacgttttcaactccccatggaagggactt |
11829464 |
T |
|
| Q |
201 |
cagttttggaatactccttactgtaagagaacgaaggtttttcagaccctccca |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
11829463 |
cagttttggaatactccttaatgtaagagattgaaggtttttcagaccctccca |
11829410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 453
Target Start/End: Complemental strand, 12040556 - 12040105
Alignment:
| Q |
2 |
taataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagttag |
101 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
12040556 |
taataatcaaagtctttagagactgtagcgtttccattcctttgggcagagaatctaactttctgcattccgaaagaaccagtttttcaagtgaagcgaa |
12040457 |
T |
|
| Q |
102 |
gttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtctttcaaagttttcacgttttcagctccccatggaagggacttc |
201 |
Q |
| |
|
||| | ||| ||||| || | |||||||||||| ||||||||||||| ||||||| ||| |||| ||||| | || |||| ||||||||||| |
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|
| T |
12040456 |
gttgcatatgctttccgggagagaagttaaaccctggcaatcataaagccttaagacttgtaaagagttcacaatctcgaatccctgaggaagggacttg |
12040357 |
T |
|
| Q |
202 |
agttttggaatactccttactgtaagagaacgaaggtttttcagaccctcccacttattttgagagttgtcaagatcaagttcttgacatctttcaatag |
301 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| | ||| ||||||||||||| ||||||||||||||||| |
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|
| T |
12040356 |
agatttggaatactccttaatgtaagagaacgaaggtttatcagaccctcccactcatttggggaggactcaagatcaagttgttgacatctttcaatag |
12040257 |
T |
|
| Q |
302 |
tgagtttttggagtgaactcgaagactggaaaccttcaggtagagaattcaacttgaaacaatctcgaatgtgaagttccggaagcgaaatgaagttttt |
401 |
Q |
| |
|
||||| ||| |||||||||| ||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
12040256 |
tgagtgtttcgagtgaactcaaagaccggaaaccttcaggtagagacttcaaatggaaacaatctcgaatgtgaagttccttaagtgaaatgaagttttt |
12040157 |
T |
|
| Q |
402 |
aatccaactcgttggtggagaatgcttaatacagtcaatcaccattgacttc |
453 |
Q |
| |
|
|| ||| ||| | |||||||| || | ||||| ||||| ||||| |||||| |
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|
| T |
12040156 |
aagccatctcttcggtggagattggtcaatacgctcaattaccatggacttc |
12040105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 11900756 - 11901204
Alignment:
| Q |
1 |
ataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagtta |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| || ||||||||| || |||| |||||||||||||||| ||| ||||| |||| ||||| | |
|
|
| T |
11900756 |
ataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgcattcagaaataactagtttgccaagggaagtga |
11900855 |
T |
|
| Q |
101 |
ggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtctttcaaagttttcacgttttcagctccccatggaagggactt |
200 |
Q |
| |
|
|||||||||| ||||||| || ||||| ||||||||||||||||| |||||| || | ||||| |||| ||||||| | ||| |||||||||||| |
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|
| T |
11900856 |
ggttacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaagagttcaagttttcaatttcccttggaagggactt |
11900955 |
T |
|
| Q |
201 |
cagttttggaatactccttactgtaagagaacgaaggtttttcagaccctcccacttattttgagagttgtcaagatcaagttcttgacatctttcaata |
300 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| ||| ||||||||| ||| | | || ||| |||| ||||||||||||| |||||| |||||| |
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|
| T |
11900956 |
gagtttgggaatactccttaatgtaagagaacgaagctttctcagacccttccattcagttccggagatgtcgagatcaagttcttcacatctctcaata |
11901055 |
T |
|
| Q |
301 |
gtgagtttttggagtgaactcgaagactggaaaccttcaggtagagaattcaacttgaaacaatctcgaatgtgaagttccggaagcgaaatgaagtttt |
400 |
Q |
| |
|
|||||| | |||||||||| |||||| |||||||| |||| ||| || || | | |||||||| ||||||||||||| |||||||| ||||||| |
|
|
| T |
11901056 |
gtgagtgatatgagtgaactcaaagacttgaaaccttgtggtaaagactttaaaataacacaatctctaatgtgaagttcctcaagcgaaacaaagtttt |
11901155 |
T |
|
| Q |
401 |
taatccaactcgttggtggagaatgcttaatacagtcaatcaccattga |
449 |
Q |
| |
|
||| ||| ||| |||||||| |||| ||||| ||||| |||||||| |
|
|
| T |
11901156 |
taagccacctctctggtggagtttgctcaatacgctcaattaccattga |
11901204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 11733417 - 11733223
Alignment:
| Q |
36 |
cattcctttgggcagagaacctaactttctgcattcagaaagaaccagtttttcaagtgaagttaggttacctatactttctggtaaagaagttaaacca |
135 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||| || || |||| ||||||||||| |||||||| | |
|
|
| T |
11733417 |
cattcctttgggcagagaatccatacttctgcattcagaaagaaccagttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaacta |
11733318 |
T |
|
| Q |
136 |
tggcaatcataaatccttaagtctttcaaagttttcacgttttcagctccccatggaagggacttcagttttggaatactccttactgtaagaga |
230 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||| |||| || ||| | || ||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
11733317 |
gggcaatcataaatccttaaatctttcaatgatttcaagtttccaaatccgcgtgtaagggtcactagttttggaatactccttaaagtaagaga |
11733223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 422
Target Start/End: Complemental strand, 11829368 - 11829215
Alignment:
| Q |
269 |
tgtcaagatcaagttcttgacatctttcaatagtgagtttttggagtgaactcgaagactggaaaccttcaggtagagaattcaacttgaaacaatctcg |
368 |
Q |
| |
|
|||| ||| |||||| || |||||||||||||| ||| | |||||| || || ||| |||||||| |||||||| | ||| | |||||||||| |
|
|
| T |
11829368 |
tgtccagaacaagttgttcacatctttcaatagaaagtgatatgagtgagcttaaaaacttgaaaccttgtggtagagactccaaaataaaacaatctct |
11829269 |
T |
|
| Q |
369 |
aatgtgaagttccggaagcgaaatgaagtttttaatccaactcgttggtggaga |
422 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
11829268 |
aatgtgaagttcctcaagtgaaatgaagtttttaagccaactctctggtggaga |
11829215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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