View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_5 (Length: 420)
Name: NF9543_low_5
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 181 - 403
Target Start/End: Complemental strand, 28968175 - 28967953
Alignment:
| Q |
181 |
cagctcctacctgaatctctgagaataattccgtccttagtaatgaagttccaaattatggaacctaaaatctttcacccgaccgtaagcaatttgtagt |
280 |
Q |
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| T |
28968175 |
cagctcctacctgaatctctgagaataattccgaccttagtaatgaagttccaaactatggaacctaaaatctttcacccgaccgtaagcaatttgtagt |
28968076 |
T |
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| Q |
281 |
tcccacaccaggtttccaagcaaagaattattgacttttgtggccattctcacacctaagctacagatgtttctagccaaagttatcacattcgatgttc |
380 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28968075 |
tcccacaccaggtttccaagcaaagtattattgacttttgtggccattctcacacctaagctacagatgtttctagccaaagttatcacattcgatgttc |
28967976 |
T |
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| Q |
381 |
cttttcatataaagtctctggtt |
403 |
Q |
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||||||||||||||||||||||| |
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| T |
28967975 |
cttttcatataaagtctctggtt |
28967953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29324843 - 29324935
Alignment:
| Q |
1 |
acgttgataagcgaaataggaaaagcaccgaaaaaggaattaatgtagtgtgtgattatcagtaccaaacgtatccatcaatcatccatactt |
93 |
Q |
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| T |
29324843 |
acgttgataagcgaaataggaaaagcaccgaaaaaggaattaatgtagtgtgtgattatcagtaccaaacgtatccatcaatcatccatactt |
29324935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 182 - 373
Target Start/End: Complemental strand, 29796508 - 29796316
Alignment:
| Q |
182 |
agctcctacctgaatctctgagaataattccgtccttagtaatgaagttccaaattatggaacctaaaatctttcacccgaccgtaagcaatttgtagtt |
281 |
Q |
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| T |
29796508 |
agctcctaccggaatctctgagaataatcttggccttagtaacaaagttccaaactatggaacttgaaatctttcacctgacagtaagtagtttgtggtt |
29796409 |
T |
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| Q |
282 |
cccacaccaggtttccaagcaaagaattattgacttttgtggccattctcacacctaagctac-agatgtttctagccaaagttatcacattc |
373 |
Q |
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||||| | ||||||||||||| || | ||||||||||||| |||||||||| |||||||| || | | |||||||||||| ||||||||||| |
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| T |
29796408 |
cccacgctaggtttccaagcatagtaatattgacttttgtagccattctcatacctaagccacaatttttttctagccaaaattatcacattc |
29796316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 34082533 - 34082694
Alignment:
| Q |
181 |
cagctcctacctgaatctctgagaataattccgtccttagtaatgaagttccaaattatggaacctaaaatctttcaccc-gaccgtaagcaatttgtag |
279 |
Q |
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||||||| ||| ||||||||||||||||| | ||||||||| |||||||||| |||||||||| ||||||| ||| ||| ||||| | ||||| | |
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| T |
34082533 |
cagctcccaccggaatctctgagaataatcttggccttagtaacaaagttccaaactatggaacctgaaatcttataccttgacagtaagtagtttgtgg |
34082632 |
T |
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| Q |
280 |
ttcccacaccaggtttccaagcaaagaattattgacttttgtggccattctcacacctaagc |
341 |
Q |
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||||||||||||||||||||||| || | | ||||||||||| | ||||||||||||||||| |
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| T |
34082633 |
ttcccacaccaggtttccaagcatagtaatgttgacttttgtagtcattctcacacctaagc |
34082694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 52193437 - 52193358
Alignment:
| Q |
18 |
aggaaaagcaccgaaaaaggaattaatg---tagtgtgtgattatcagtaccaaacg---tatccatcaatcatccatac |
91 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
52193437 |
aggaaaagcaccgaaaaaggaattaatgtagtagtgggtgattatcagtaccaaacgacatatccatcaatcatccatac |
52193358 |
T |
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