View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_6 (Length: 419)
Name: NF9543_low_6
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 158 - 401
Target Start/End: Complemental strand, 47437047 - 47436803
Alignment:
| Q |
158 |
attcaagaaatggaatcgtagggtcaatcgttccgatactgttccnnnnnnnnaagataa-ttaaacatattttcttgtgttgtttagttatttttctta |
256 |
Q |
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| T |
47437047 |
attcaagaaatggaatcgtaggatcaatcgttctgatactcttccttttttttaagataaattaaacatattttcttgtgttgtttagttatttttctta |
47436948 |
T |
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| Q |
257 |
cttaacatcatcaatttgtgatgttttcaggttcttcgagcaatgccctctccctaatggcaagcaaaggaaacaattgagttgtgagctaggtcttaca |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47436947 |
cttaacatcatcaatttgtgatgttttcaggttcttcgagcaatgccctctccctaatggcaagcaaaggaaacaattgagttgtgagctaggccttaca |
47436848 |
T |
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| Q |
357 |
ccgacgcaaatcaagttctggtttcaaaacaagcgcaaccaaatt |
401 |
Q |
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| T |
47436847 |
cctgcgcaaatcaagttctagtttcaaaacaagcgcaaccaaatt |
47436803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 47437248 - 47437106
Alignment:
| Q |
16 |
caaaatgtggttgatcatcctcaaccagtgcaaaaacaacaatttcgagacatgccaatcaacatcacttcttcaatcggtgatttggaaagatgtaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47437248 |
caaaatgtggttgatcatcctcaaccagtgcaaaaacaacaatttcgagacatgccaatcaacatcacttcttcaatcggtgatttggaaagatgtaatc |
47437149 |
T |
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| Q |
116 |
aaaaccaaaattctagaaatgaagctctttcttcccttcaaga |
158 |
Q |
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| T |
47437148 |
aaaaccaaaattctagaaatgaagctctttcttcccttcaaga |
47437106 |
T |
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