View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_7 (Length: 403)
Name: NF9543_low_7
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 198 - 393
Target Start/End: Original strand, 1395028 - 1395223
Alignment:
| Q |
198 |
gaaaaatgggatgtataagattaagagttaatgaatgaaatggttacttaattcccaagttacttaaaagaatccattatctatgtagttttccttgttc |
297 |
Q |
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| T |
1395028 |
gaaaaatgggatgtataagattaagagttaatgaatgaaatggttacttaattcccaagttacttaaaagaatccattatctatgtagttttccttgttc |
1395127 |
T |
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| Q |
298 |
tgcgacatcgttggtgtctaataccgacacggtacatataattacaatccttcactttcactttcttaatttatgttcgatgtttatgtgtctgtg |
393 |
Q |
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| T |
1395128 |
tgcgacatcgttggtgtctaataccgacacggcacatataattacaatccttcactttcactttcttaatttatgttcgatgtttatgtgtctgtg |
1395223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 1394850 - 1394929
Alignment:
| Q |
20 |
gttcgtcaagttcaatgcatcagtttcattgcacacacacctgaagtttactaagttcattgcattggaatttggaagaa |
99 |
Q |
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| T |
1394850 |
gttcgtcaagttcaatgcatcagtttcattgcacacacacctgatgtttactaagttcattgcactggaatttggaagaa |
1394929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 1358749 - 1358807
Alignment:
| Q |
18 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctgaagtttactaagtt |
76 |
Q |
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| T |
1358749 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctgaagtttactaagtt |
1358807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 1374301 - 1374356
Alignment:
| Q |
18 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctgaagtttactaa |
73 |
Q |
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| T |
1374301 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctgaagtttactaa |
1374356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 1390602 - 1390657
Alignment:
| Q |
18 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctgaagtttactaa |
73 |
Q |
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| T |
1390602 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctgatgtttactaa |
1390657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 1350843 - 1350887
Alignment:
| Q |
18 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctg |
62 |
Q |
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| T |
1350843 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctg |
1350887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 1384497 - 1384541
Alignment:
| Q |
18 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctg |
62 |
Q |
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| T |
1384497 |
acgttcgtcaagttcaatgcatcagtttcattgcacacacacctg |
1384541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 10387330 - 10387398
Alignment:
| Q |
198 |
gaaaaatgggatgtataagattaagagttaatgaatgaaatggttacttaattcccaagttacttaaaa |
266 |
Q |
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| T |
10387330 |
gaaaaatggaatgtataagattaagagttaatgaacaaaatggttactttattctcaagttactaaaaa |
10387398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 10387437 - 10387509
Alignment:
| Q |
316 |
taataccgacacggtacatataattacaatccttcactttcactttcttaatttatgttcgatgtttatgtgt |
388 |
Q |
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| T |
10387437 |
taatactgacacgacacatatgattacaatcaatcactttcactttcttaatttatgatcgatgtttatgtgt |
10387509 |
T |
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