View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9543_low_8 (Length: 400)
Name: NF9543_low_8
Description: NF9543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9543_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 6958665 - 6958280
Alignment:
| Q |
13 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
112 |
Q |
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| T |
6958665 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
6958566 |
T |
|
| Q |
113 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
212 |
Q |
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| T |
6958565 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
6958466 |
T |
|
| Q |
213 |
tcaaatgacactaaaaacctacaactattcctaccatattaccatccttataaaacataagccaaaaatcacaataacacttatattgatgtaatctaga |
312 |
Q |
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| T |
6958465 |
tcaaatgacactaaaaacctataactattcctaccaaagtaccatccttataaaacataagccaaaaatcacaataacacttatactgatgtaatctaga |
6958366 |
T |
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| Q |
313 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattacaatataatgttacttgaagatgtccatctcat |
398 |
Q |
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| T |
6958365 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattgcaatataatgttacttgaaaatgaccatatcat |
6958280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 31081843 - 31081743
Alignment:
| Q |
133 |
acaaaagtttatggaatcacattacacct-atgcctatttttcaaga---gtaagaccgacaattttcaagcagaattcaaacttcaaatgacactaaaa |
228 |
Q |
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||||||||||||||||||| | ||||| || |||||| ||||||| |||||||| |||||||| | ||||||| |||||||||||||||| |||| |
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| T |
31081843 |
acaaaagtttatggaatcatggtgcaccttattcctattattcaagaagtgtaagacctgcaattttctatcagaattaaaacttcaaatgacacaaaaa |
31081744 |
T |
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| Q |
229 |
a |
229 |
Q |
| |
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| |
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| T |
31081743 |
a |
31081743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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