View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9544_high_3 (Length: 215)

Name: NF9544_high_3
Description: NF9544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9544_high_3
NF9544_high_3
[»] chr8 (5 HSPs)
chr8 (4-201)||(4160166-4160363)
chr8 (1-201)||(4120794-4120994)
chr8 (1-201)||(4131057-4131257)
chr8 (1-200)||(4151505-4151704)
chr8 (12-201)||(4143631-4143821)
[»] chr7 (14 HSPs)
chr7 (28-195)||(19938564-19938731)
chr7 (28-195)||(19969703-19969870)
chr7 (43-124)||(20063002-20063083)
chr7 (48-197)||(20294176-20294325)
chr7 (48-196)||(20243061-20243209)
chr7 (48-200)||(20279077-20279229)
chr7 (43-197)||(20288770-20288924)
chr7 (34-107)||(20005816-20005889)
chr7 (48-125)||(20263551-20263628)
chr7 (48-200)||(20283654-20283806)
chr7 (48-112)||(20273366-20273430)
chr7 (48-112)||(20303242-20303306)
chr7 (54-125)||(20168556-20168627)
chr7 (48-195)||(20231096-20231243)
[»] chr2 (4 HSPs)
chr2 (43-166)||(2712954-2713077)
chr2 (43-118)||(2745911-2745986)
chr2 (78-191)||(34328560-34328673)
chr2 (43-107)||(2724092-2724156)
[»] chr4 (1 HSPs)
chr4 (34-200)||(40824209-40824375)
[»] chr6 (1 HSPs)
chr6 (80-117)||(25810324-25810361)
[»] chr3 (5 HSPs)
chr3 (80-117)||(5445451-5445488)
chr3 (80-117)||(5454034-5454071)
chr3 (80-117)||(5849870-5849907)
chr3 (80-117)||(20342778-20342815)
chr3 (81-117)||(5489227-5489263)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 4160363 - 4160166
Alignment:
Q  4 ttgctggaaaaagaatctcaaaatcatcttgacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaag 103  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4160363 ttgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgcaatcttgtaag 4160264  T
Q  104 acttcttggttgttgtgttgaaaggggagagcaaatgttggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagttctttt 201  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160263 acttcttggttgctgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataagagtctggatgcctttctctttggttagttctttt 4160166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 4120994 - 4120794
Alignment:
Q  1 aaattgctggaaaaagaatctcaaaatcatcttgacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgt 100  Q
    |||||||||  |||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  4120994 aaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatcgtaatcttgt 4120895  T
Q  101 aagacttcttggttgttgtgttgaaaggggagagcaaatgttggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagttcttt 200  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||||    
T  4120894 aagacttcttggttgttgtgtagaaaggggggagcaaatgttggtttatgagttcatgccaaataagagtttggatgtctttatctttggttagttcttt 4120795  T
Q  201 t 201  Q
    |    
T  4120794 t 4120794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 4131257 - 4131057
Alignment:
Q  1 aaattgctggaaaaagaatctcaaaatcatcttgacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgt 100  Q
    |||||||||  |||||| |||||||| ||||| ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||    
T  4131257 aaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaattcatgaatgaagttgtagtgatttctaaacttcaacatcgcaatcttgt 4131158  T
Q  101 aagacttcttggttgttgtgttgaaaggggagagcaaatgttggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagttcttt 200  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  4131157 aagacttcttggttgttgtgttgaaagaggagagaaaatgttggtctatgagttcatgccaaataaaagtttggatgcctttctctttggttagttcttt 4131058  T
Q  201 t 201  Q
    |    
T  4131057 t 4131057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 4151704 - 4151505
Alignment:
Q  1 aaattgctggaaaaagaatctcaaaatcatcttgacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgt 100  Q
    |||||||||  |||||| |||||||| ||||| ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||    
T  4151704 aaattgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaattcatgaatgaagttgtagtgatttctaaacttcaacatcgcaatcttgt 4151605  T
Q  101 aagacttcttggttgttgtgttgaaaggggagagcaaatgttggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagttcttt 200  Q
     |||||| | ||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||||||| || ||||||||||||||||||    
T  4151604 gagacttttaggttgctgtgttgaaagaggagagcaaattttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagttcttt 4151505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 4143821 - 4143631
Alignment:
Q  12 aaaagaatctcaaaatcatcttgacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaa-tcttgtaagacttctt 110  Q
    |||||| |||| || |||||  ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| || ||| |||||||||||     
T  4143821 aaaagactctcgaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcggaaatctcgtaagacttcta 4143722  T
Q  111 ggttgttgtgttgaaaggggagagcaaatgttggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagttctttt 201  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| ||||||| || |||||||||||||| ||||    
T  4143721 ggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaacaaaagtttggatgcattcctctttggttagttatttt 4143631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 19938564 - 19938731
Alignment:
Q  28 catcttgacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaag 127  Q
    ||||| |||||||  || ||||||| ||||||||||| || || |||||||| |||||||| || |||||||||| ||||||||| || ||||||||  |    
T  19938564 catctggacaaggtctaaaagaattcatgaatgaagtggcggtcatttctaagcttcaacaccgcaatcttgtaaaacttcttggctgctgtgttgacgg 19938663  T
Q  128 gggagagcaaatgttggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagt 195  Q
     |  ||  | |||||| | ||||| | |||||||||||| ||| ||||||| ||||||||||||||||    
T  19938664 agaggaaaagatgttgatatatgagtacatgccaaataaaagtttggatgcttttctctttggttagt 19938731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 19969703 - 19969870
Alignment:
Q  28 catcttgacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaag 127  Q
    ||||| |||||||  || ||||||| ||||||||||| || || |||||||| |||||||| || |||||||||| ||||||||| || ||||||||  |    
T  19969703 catctggacaaggtctaaaagaattcatgaatgaagtggcggtcatttctaagcttcaacaccgcaatcttgtaaaacttcttggctgctgtgttgacgg 19969802  T
Q  128 gggagagcaaatgttggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagt 195  Q
     |  ||  | |||||| | ||||| | |||||||||||| ||| ||||||| ||||||||||||||||    
T  19969803 agaggaaaagatgttgatatatgagtacatgccaaataaaagtttggatgcttttctctttggttagt 19969870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 20063083 - 20063002
Alignment:
Q  43 tagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttga 124  Q
    |||||||||| |||||||||||||  ||  ||| ||| |||||||| ||||||||||||||||||||||| |||||| ||||    
T  20063083 tagaagaattcatgaatgaagtagtggtcctttgtaagcttcaacaccgtaatcttgtaagacttcttggctgttgtattga 20063002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 20294176 - 20294325
Alignment:
Q  48 gaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggagagcaaatgttggttt 147  Q
    ||||| |||||||||||||  ||  ||| ||| |||||||| |||||||||||||| |||||||| || ||| ||||| | |  ||| | |||||| | |    
T  20294176 gaattcatgaatgaagtagtggttctttgtaagcttcaacaccgtaatcttgtaaggcttcttggctgctgtattgaaggcgatgagaagatgttgatgt 20294275  T
Q  148 atgaattcatgccaaataagagtctggatgcctttctctttggttagttc 197  Q
    |||| | ||||||||| |||||| ||||||| ||  ||||||||||||||    
T  20294276 atgagtacatgccaaacaagagtttggatgcattcatctttggttagttc 20294325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 20243061 - 20243209
Alignment:
Q  48 gaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggagagcaaatgttggttt 147  Q
    ||||| ||||| ||||||   ||||||| ||| ||||||||||| || |||||||| ||| |||| |||||||||||| | |  ||  | |||||| | |    
T  20243061 gaattcatgaacgaagtattggtgatttgtaagcttcaacatcgcaaccttgtaaggcttattggctgttgtgttgaaggtgatgaaaagatgttgatgt 20243160  T
Q  148 atgaattcatgccaaataagagtctggatgcctttctctttggttagtt 196  Q
    |||||| ||||||||| || ||| ||||||| ||| |||||||||||||    
T  20243161 atgaatacatgccaaacaaaagtttggatgcatttatctttggttagtt 20243209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 20279077 - 20279229
Alignment:
Q  48 gaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggagagcaaatgttggttt 147  Q
    |||||||||||||||||||  ||  ||| ||| |||||||| || |||||||| | |||||||||||||||| ||||| | |  ||  | |||||| | |    
T  20279077 gaatttatgaatgaagtagtggtcctttgtaagcttcaacaccgcaatcttgttaaacttcttggttgttgtattgaaggtgatgaaaagatgttgatgt 20279176  T
Q  148 atgaattcatgccaaataagagtctggatgcctttctctttggttagttcttt 200  Q
    |||| | ||||||||| || ||| ||||||| ||  |||||||||||||||||    
T  20279177 atgagtacatgccaaacaaaagtttggatgcattcatctttggttagttcttt 20279229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 197
Target Start/End: Original strand, 20288770 - 20288924
Alignment:
Q  43 tagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggagagcaaatgtt 142  Q
    |||||||||| | |||||||||||  || |||| ||| ||||||||||| |||||  ||||||||||||| || ||||||||| | |  ||  | |||||    
T  20288770 tagaagaattcaagaatgaagtagttgtcatttgtaagcttcaacatcgcaatctgataagacttcttggctgctgtgttgaaggagaggaaaagatgtt 20288869  T
Q  143 ggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagttc 197  Q
    | | ||||| | |||||||||||| ||| ||||||| ||| | |||||| |||||    
T  20288870 gatatatgagtacatgccaaataaaagtttggatgcatttgtgtttggtcagttc 20288924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 20005889 - 20005816
Alignment:
Q  34 gacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagactt 107  Q
    |||||||  |||||||||| ||||||||||| | |||||||||||| ||||| || || |||||||||||||||    
T  20005889 gacaagggttagaagaattcatgaatgaagtcgtagtgatttctaagcttcagcaccgcaatcttgtaagactt 20005816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 20263551 - 20263628
Alignment:
Q  48 gaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaa 125  Q
    ||||| ||||| ||| |||  ||||||| ||| |||||||| |||||||||||||||||| |||| ||||||||||||    
T  20263551 gaattcatgaacgaaatagtggtgatttgtaagcttcaacaccgtaatcttgtaagacttattggctgttgtgttgaa 20263628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 20283654 - 20283806
Alignment:
Q  48 gaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggagagcaaatgttggttt 147  Q
    ||||| ||||||||||||   ||||||  ||| |||||||| || ||||||||||||||| |||| |||||||||||| | |  ||  | |||||| | |    
T  20283654 gaattcatgaatgaagtaatggtgattagtaagcttcaacaccgcaatcttgtaagactttttggctgttgtgttgaaggagatgaaaagatgttgatgt 20283753  T
Q  148 atgaattcatgccaaataagagtctggatgcctttctctttggttagttcttt 200  Q
    ||||   |||||||||||| | | ||||||| ||  |||||||||||||||||    
T  20283754 atgaggacatgccaaataaaactttggatgcgttcatctttggttagttcttt 20283806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 20273366 - 20273430
Alignment:
Q  48 gaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttgg 112  Q
    ||||| |||||||||||||  ||  ||| ||| |||||||| |||||||||||||||||||||||    
T  20273366 gaattcatgaatgaagtagtggttctttgtaagcttcaacaccgtaatcttgtaagacttcttgg 20273430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 20303242 - 20303306
Alignment:
Q  48 gaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttgg 112  Q
    ||||| |||||||||||||  ||  ||| ||| |||||||| |||||||||||||||||||||||    
T  20303242 gaattcatgaatgaagtagtggtcctttgtaagcttcaacaccgtaatcttgtaagacttcttgg 20303306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 20168627 - 20168556
Alignment:
Q  54 atgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaa 125  Q
    |||||||||||||  || |||| ||| |||||||| || ||||||||||||||| ||||||| ||| |||||    
T  20168627 atgaatgaagtagtggttatttgtaagcttcaacaccgcaatcttgtaagacttgttggttgctgtattgaa 20168556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 20231096 - 20231243
Alignment:
Q  48 gaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggagagcaaatgttggttt 147  Q
    ||||| ||||| |||||||  || |||| ||| |||||||| || || |||||||||||| |||| |||||||||||| | |  ||  | |||||| | |    
T  20231096 gaattcatgaacgaagtagtggtaatttgtaagcttcaacaccgcaaccttgtaagacttattggctgttgtgttgaaggtgatgaaaagatgttgatgt 20231195  T
Q  148 atgaattcatgccaaataagagtctggatgcctttctctttggttagt 195  Q
    |||||| ||||||||| || ||| ||||| | ||  ||||||||||||    
T  20231196 atgaatacatgccaaacaaaagtttggattcattcatctttggttagt 20231243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 2713077 - 2712954
Alignment:
Q  43 tagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggagagcaaatgtt 142  Q
    |||||||||||||||| |||||    |||||||| || ||||||||||| ||||||||||||||||| ||||||||  | ||| ||| |||  |||||||    
T  2713077 tagaagaatttatgaacgaagtgattgtgatttcaaagcttcaacatcgcaatcttgtaagacttctaggttgttgcatcgaaggggaagaaaaaatgtt 2712978  T
Q  143 ggtttatgaattcatgccaaataa 166  Q
    ||| ||||||| |||||| |||||    
T  2712977 ggtctatgaatacatgccgaataa 2712954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 2745986 - 2745911
Alignment:
Q  43 tagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttg 118  Q
    ||||||||||||||||||||||    |||||||| || ||||||||||| |||||||| |||||||| || |||||    
T  2745986 tagaagaatttatgaatgaagtgattgtgatttccaagcttcaacatcgcaatcttgttagacttctaggctgttg 2745911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 34328560 - 34328673
Alignment:
Q  78 aaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggagagcaaatgttggtttatgaattcatgccaaataagagtctggatg 177  Q
    ||||||||||| || ||||||||||  ||||||||||||||  ||||| | |  ||| ||||| |||||||||||| |||||| ||||  ||| ||||      
T  34328560 aaacttcaacaccgaaatcttgtaaagcttcttggttgttgccttgaaggagaggagaaaatgctggtttatgaatacatgcctaatagtagtttggact 34328659  T
Q  178 cctttctctttggt 191  Q
    ||||| ||||||||    
T  34328660 cctttatctttggt 34328673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 2724156 - 2724092
Alignment:
Q  43 tagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagactt 107  Q
    ||||||||||||||||||||||    |||||||| || ||||||||||| |||||||| ||||||    
T  2724156 tagaagaatttatgaatgaagtgattgtgatttccaagcttcaacatcgcaatcttgttagactt 2724092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 40824375 - 40824209
Alignment:
Q  34 gacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgtaatcttgtaagacttcttggttgttgtgttgaaaggggaga 133  Q
    |||| ||| |||||||||| | |||||||||||  ||||||| ||| ||||||||||| |||||| |||||||| |||| || |||||||||   |  ||    
T  40824375 gacagggactagaagaattcaagaatgaagtagttgtgatttgtaagcttcaacatcgcaatcttataagacttattggctgctgtgttgaagcagagga 40824276  T
Q  134 gcaaatgttggtttatgaattcatgccaaataagagtctggatgcctttctctttggttagttcttt 200  Q
      | |||||| | || || | |||||||||||| ||| ||||||| ||| |||||||| ||||||||    
T  40824275 aaagatgttgatatacgagtacatgccaaataaaagtttggatgcatttgtctttggtcagttcttt 40824209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 25810324 - 25810361
Alignment:
Q  80 acttcaacatcgtaatcttgtaagacttcttggttgtt 117  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  25810324 acttcaacaccgtaatcttgtaaaacttcttggttgtt 25810361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 5445488 - 5445451
Alignment:
Q  80 acttcaacatcgtaatcttgtaagacttcttggttgtt 117  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  5445488 acttcaacaccgtaatcttgtaaaacttcttggttgtt 5445451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 5454071 - 5454034
Alignment:
Q  80 acttcaacatcgtaatcttgtaagacttcttggttgtt 117  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  5454071 acttcaacaccgtaatcttgtaaaacttcttggttgtt 5454034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 5849870 - 5849907
Alignment:
Q  80 acttcaacatcgtaatcttgtaagacttcttggttgtt 117  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  5849870 acttcaacaccgtaatcttgtaaaacttcttggttgtt 5849907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 20342815 - 20342778
Alignment:
Q  80 acttcaacatcgtaatcttgtaagacttcttggttgtt 117  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  20342815 acttcaacaccgtaatcttgtaaaacttcttggttgtt 20342778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 5489263 - 5489227
Alignment:
Q  81 cttcaacatcgtaatcttgtaagacttcttggttgtt 117  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  5489263 cttcaacaccgtaatcttgtaaaacttcttggttgtt 5489227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University