View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9544_low_2 (Length: 475)
Name: NF9544_low_2
Description: NF9544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9544_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 38052952 - 38053397
Alignment:
| Q |
18 |
attggttgaatatggatatagcaggggatgatgttaatgagtcgggagagattgtggatatgacattagaagattatggtaacttttggctaaacagcat |
117 |
Q |
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| T |
38052952 |
attggttgaatatggatatagcaggggatgatgttaatgagtcgggagagattgtggatatgacattagaagattatggtaacttttggctaaacagcat |
38053051 |
T |
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| Q |
118 |
gcaagatcttgaattgcacatgggagtggacttggaaagagataacatggacttgaatcaaaatccagcgcaagagaccacattaagtgatgaagcaacc |
217 |
Q |
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| T |
38053052 |
gcaagatcttgaattgcacatgggagtggacttggaaagagataacatggacttgaatcaaaatccagcgcaagagaccacattaagtgatgaagcaacc |
38053151 |
T |
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| Q |
218 |
tcagtttgggacttgccatatgattaagttcttttgcttacctcactgatgaactcggatctttacggccatccagtccactaagatttggctggacggc |
317 |
Q |
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| T |
38053152 |
tcagtttgggacttgccatacgattaagttcttttgcttacctcactgatgaactcggatctttacggccatccagtccactaagatttggctggacggc |
38053251 |
T |
|
| Q |
318 |
tacagataatctgagctctgaagtgcataccaatttgttttctttccaccatttaattagatagaaaataaaggtctaaataagtaggggaccgtctcct |
417 |
Q |
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| T |
38053252 |
tacagataatctgagctctgaagtgcataccaatttgttttctttccaccatttaattagatagaaaataaaggtctaaataagtaggggaccgtctcct |
38053351 |
T |
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| Q |
418 |
gatatgtatgtaactcgcttgaggtttagcatgttcgtattatctc |
463 |
Q |
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| T |
38053352 |
gatatgtatgtaactcgcttgaggtttagcatgttcgtattatctc |
38053397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 41240531 - 41240617
Alignment:
| Q |
165 |
tggacttgaatcaaaatccagcgcaagagaccacattaagtgatgaagcaacctcagtttgggacttgccatatgattaagttcttt |
251 |
Q |
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| T |
41240531 |
tggacttgaatcaaaatccagcgaaagagaccaggccaagtcatgaagcaacctcagtttgggacttgacctataattaagttcttt |
41240617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 41240435 - 41240538
Alignment:
| Q |
48 |
atgttaatgagtcgggagagattgtggatatgacattagaagattatggtaacttttggctaaacagcatgcaagatcttgaattgcacatgggagtgga |
147 |
Q |
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| T |
41240435 |
atgtgaatgagttgagagaaattgtggttaggacagtagaagattttggtggctttcggctaaatggcatgggagatcttgaattgcacctgggagtgga |
41240534 |
T |
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| Q |
148 |
cttg |
151 |
Q |
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|||| |
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| T |
41240535 |
cttg |
41240538 |
T |
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