View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9544_low_3 (Length: 445)

Name: NF9544_low_3
Description: NF9544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9544_low_3
NF9544_low_3
[»] chr7 (5 HSPs)
chr7 (12-431)||(25636372-25636791)
chr7 (162-431)||(25442330-25442599)
chr7 (150-395)||(25484269-25484514)
chr7 (145-396)||(25478806-25479057)
chr7 (154-403)||(25436317-25436566)
[»] chr5 (1 HSPs)
chr5 (150-389)||(500196-500435)
[»] chr2 (6 HSPs)
chr2 (148-402)||(35177800-35178054)
chr2 (151-389)||(35169522-35169760)
chr2 (150-422)||(35105829-35106101)
chr2 (150-396)||(35054942-35055188)
chr2 (150-355)||(35183845-35184050)
chr2 (160-343)||(35046945-35047128)


Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 25636372 - 25636791
Alignment:
Q  12 agagacggatccttaacctttgtaaagggccccattggactcatctatcactttttaattcaaatcaaacctgtagggcaagagaggtataatacaactt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25636372 agagacggatccttaacctttgtaaagggccccattggactcatctatcactttttaattcaaatcaaacctgtagggcaagtgaggtataatacaactt 25636471  T
Q  112 caatttcttcgatggattctgatagcagcgaaggctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25636472 caatttcttcgatggattctgatagcagcgaaggctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttga 25636571  T
Q  212 ccatctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  25636572 ccatctctatgctcatctcactagaaaaggtatttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggca 25636671  T
Q  312 attaaagattcgaggctttctatcgttgtcttctcaaaagattacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagta 411  Q
    |||||||||||| || |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  25636672 attaaagattcgcgggtttctatcattgtcttctccaaagattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaa 25636771  T
Q  412 gattgaaacaagttgttttt 431  Q
    ||||||||| ||||||||||    
T  25636772 gattgaaactagttgttttt 25636791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 162 - 431
Target Start/End: Original strand, 25442330 - 25442599
Alignment:
Q  162 gatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgaccttcaaggatg 261  Q
    ||||| || |||||||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||    |||||||||||    
T  25442330 gatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtcttcaaggatg 25442429  T
Q  262 acaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctcaaaagattacgcttc 361  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| |||||||||| |||||||| |||||    
T  25442430 acaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaaagattatgcttc 25442529  T
Q  362 atcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtagattgaaacaagttgttttt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  25442530 atcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaagattgaaacaagttgttttt 25442599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 150 - 395
Target Start/End: Original strand, 25484269 - 25484514
Alignment:
Q  150 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga 249  Q
    ||||||| ||| ||||| || ||||||||||||||| |||||||||| ||  ||||||||||||||||||| |||||||||| ||||||||||||||  |    
T  25484269 agctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctcaatagaaaaggtattttca 25484368  T
Q  250 ccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctcaaa 349  Q
    ||||||||||||||||   ||| |||||||| ||| ||||||||||||||||||| || |||||| || | ||  |  ||||||||||||| ||||| ||    
T  25484369 ccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgttttctccaa 25484468  T
Q  350 agattacgcttcatcaacatggtgtttggatgaaatggctgctatt 395  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||    
T  25484469 agattatgcttcttcaacatggtgtttggatgaaatggctgctatt 25484514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 145 - 396
Target Start/End: Complemental strand, 25479057 - 25478806
Alignment:
Q  145 gctatagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtat 244  Q
    ||||||| |||| ||| || || ||||||||||||||||||  ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||    
T  25479057 gctatagatatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtat 25478958  T
Q  245 ttcgaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttc 344  Q
    ||  || |||| ||||||| |   |||  ||||||| ||||||||||||| ||||||||  ||||||||| || | ||| | |||||||| |||||||||    
T  25478957 tttcacgttcatggatgaccagcagctcgagaaaggggaatccatttcactccaacttcgacaggcaattcaacaatcgcgtctttctatagttgtcttc 25478858  T
Q  345 tcaaaagattacgcttcatcaacatggtgtttggatgaaatggctgctattg 396  Q
    ||| ||||||| |||   ||||| |||||||||||||||||| ||| |||||    
T  25478857 tcagaagattatgctggctcaacttggtgtttggatgaaatgactgttattg 25478806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 154 - 403
Target Start/End: Complemental strand, 25436566 - 25436317
Alignment:
Q  154 ataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgacctt 253  Q
    ||||||| ||||| || |||||||| |||||| |||| ||||||||  | |||||||| |||||| |  |||||||   ||||||||||||||  |||||    
T  25436566 ataaatacgatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaaggtatttttacctt 25436467  T
Q  254 caaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctcaaaagat 353  Q
    ||||||||||||   ||| || ||||| ||| ||||||||||||||||||| || ||||||  |   ||  || ||| |||| |||| ||||||| ||||    
T  25436466 caaggatgacaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattcgacggtcacgggtttgtatcattgttttctcaagagat 25436367  T
Q  354 tacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatc 403  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||    
T  25436366 tatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatc 25436317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 389
Target Start/End: Complemental strand, 500435 - 500196
Alignment:
Q  150 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga 249  Q
    ||||||| ||||||||| |||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||  |    
T  500435 agctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatctcattagaaaaggtattttca 500336  T
Q  250 ccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctcaaa 349  Q
    |||| ||||||||   |  |||  | |||||  | || |||||| | |||||||| || ||||||  | | ||  |  |||||||  || | ||||||||    
T  500335 cctttaaggatgatgcacagctcaacaaaggtcattctatttcaactcaacttcttcatgcaattcgacaatcacgtgtttctattattattttctcaaa 500236  T
Q  350 agattacgcttcatcaacatggtgtttggatgaaatggct 389  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  500235 agattatgcttcatcaacatggtgtttggatgaaatggct 500196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 148 - 402
Target Start/End: Complemental strand, 35178054 - 35177800
Alignment:
Q  148 atagctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttc 247  Q
    ||||||||||||| || || |||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||     
T  35178054 atagctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtatttt 35177955  T
Q  248 gaccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctca 347  Q
      | ||||||||||| |||  |||  ||||||| |||| | |||| |  |||||||  || ||||||  | ||||  || | ||||||||||||||||||    
T  35177954 tgcgttcaaggatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgacaagcaattgcaaattcacggatatctatcgttgtcttctca 35177855  T
Q  348 -aaagattacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaat 402  Q
     ||||| || |||   ||||||||||||||||| ||||||||| |||||| |||||    
T  35177854 gaaaga-tatgctgagtcaacatggtgtttggaagaaatggctactattgttgaat 35177800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 389
Target Start/End: Complemental strand, 35169760 - 35169522
Alignment:
Q  151 gctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgac 250  Q
    |||||||||| ||||| |||||||||||||||||  |||||||||| ||||| |||||||| ||||| ||||||||||| |||||||| ||| |||   |    
T  35169760 gctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc 35169661  T
Q  251 cttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctca-aa 349  Q
    |||||||||||| |||  |||  ||||||| |||| | ||||| | |||| ||  || ||||||| | ||||  || ||||||| |||||||||||| ||    
T  35169660 cttcaaggatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgacaagcaattacaaattcacggatttctattgttgtcttctcagaa 35169561  T
Q  350 agattacgcttcatcaacatggtgtttggatgaaatggct 389  Q
    ||| || |||   ||||||||||||||||| |||||||||    
T  35169560 aga-tatgctgagtcaacatggtgtttggaagaaatggct 35169522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 422
Target Start/End: Complemental strand, 35106101 - 35105829
Alignment:
Q  150 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga 249  Q
    ||||||| ||| || || |||||||||||||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| |  ||||| |||||||       
T  35106101 agctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtatttttg 35106002  T
Q  250 ccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctc-aa 348  Q
    |||||||||||||  ||  |||| ||||||| |||||| |||| || |||||||| || |||||| || ||||  || ||||||| |||||||||||  |    
T  35106001 ccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaagcaattcaaaattctcgggtttctattgttgtcttctctga 35105902  T
Q  349 aagattacgcttcatcaacatggtgtttggatgaaatggctgctattgatgaatccggtagtagattgaaacaa 422  Q
    |||| || ||    ||||||||||||||||| || |||||| || ||| ||||| | |||  ||||||||||||    
T  35105901 aaga-tatgccgagtcaacatggtgtttggaagagatggctactgttgctgaatgccgtaaaagattgaaacaa 35105829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 396
Target Start/End: Complemental strand, 35055188 - 35054942
Alignment:
Q  150 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga 249  Q
    ||||||||||| |  || || |||||||| |||||||||||||| ||||| |  |||||||| ||||| ||||||||||| || |||||||||||||       
T  35055188 agctataaatacggggtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttg 35055089  T
Q  250 ccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctcaaa 349  Q
    |||||||||||||||||   ||| ||||||| ||||  |||||||| || ||||| || ||||||  | ||||| |  ||| ||| ||||||||||| ||    
T  35055088 ccttcaaggatgacaaaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaattcgaaattcgcgaatttttattgttgtcttctctaa 35054989  T
Q  350 agattacgcttcatcaacatggtgtttggatgaaatggctgctattg 396  Q
    |   || ||   |||||| ||||||||||| || |||||||| ||||    
T  35054988 aacatatgccgaatcaacttggtgtttggaagagatggctgcaattg 35054942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 355
Target Start/End: Complemental strand, 35184050 - 35183845
Alignment:
Q  150 agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga 249  Q
    ||||||| ||||||||| |||||||||||| | ||| |||||||||||| ||| |||||||| |||||  |||||||||| || |  || |||||||       
T  35184050 agctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatctaacaactaagggtattttcg 35183951  T
Q  250 ccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtcttctcaaa 349  Q
    | |||||||||||||||   ||| | ||||| |||||| |||| || |||||||| || |||||| ||  |||  || ||||||| ||||||||||| ||    
T  35183950 ctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaa 35183851  T
Q  350 agatta 355  Q
    | ||||    
T  35183850 aaatta 35183845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 343
Target Start/End: Complemental strand, 35047128 - 35046945
Alignment:
Q  160 atgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgaccttcaagga 259  Q
    ||||||| |||||||||||||||||  | ||||| |||||||| ||  | || |||||||||  ||||||||  ||||||||||| ||   |||||||||    
T  35047128 atgatgtgtttatcagtttcagaggcaccgacactcgcaacactttcatcgatcatctctatcatcatctcatcagaaaaggtatctctgtcttcaagga 35047029  T
Q  260 tgacaaatcgcttcagaaaggcgaatccatttcaccccaacttctgcaggcaattaaagattcgaggctttctatcgttgtctt 343  Q
    |||  |||| || | |||||| || | |||||||    ||||||| |||||||||  |||||| ||||||||||| ||||||||    
T  35047028 tgatcaatctctccggaaaggagatttcatttcagaataacttcttcaggcaattcgagattcaaggctttctatagttgtctt 35046945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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