View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9544_low_4 (Length: 379)
Name: NF9544_low_4
Description: NF9544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9544_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 48437054 - 48437407
Alignment:
| Q |
11 |
gtgttctgcatatatgtcacataagtatgaggtgttaggtcagtagaaataatttgactttataatctcaagagacgaagttcaaaagattatattatat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48437054 |
gtgttctgcatatatgtcacataagtatgaggtgttaggtcagtagaaataatttgactttataatctcaagagacgaagttccaaagattatattatat |
48437153 |
T |
|
| Q |
111 |
tgatgtcgataattagttaccagggaagactccggcaaatccatcagccttctcaatgagttcatcaattgggatggatgcaatggcagggtctgtgtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48437154 |
tgatgtcgataattagttaccagggaagactccggcaaatccatcagccttctcaatgagttcatcaattgggatggatgcaatggcagggtctgtgtta |
48437253 |
T |
|
| Q |
211 |
tcaccgagaagagatgatgaagggtacatgttggtgcccattccaagtctgcgaccggtttcttttccaatggcaagttgatcaccagtgatcatcttaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48437254 |
tcaccgagaagagatgatgaagggtacatgttggtgcccattccaagtctgcgaccggtttcttttccaatggcaagttgatcaccagtgatcatcttaa |
48437353 |
T |
|
| Q |
311 |
cattaacaccaaggtcaagagcacatcgaatggtctcagcactatcatgccttg |
364 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48437354 |
cattaacaccaaggtcaagagcacgtcgaatggtctcagcactatcatgccttg |
48437407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 53075990 - 53076058
Alignment:
| Q |
294 |
accagtgatcatcttaacattaacaccaaggtcaagagcacatcgaatggtctcagcactatcatgcct |
362 |
Q |
| |
|
|||||| |||||||||||||| |||||||| | |||||| | ||||| || |||||||| |||||||| |
|
|
| T |
53075990 |
accagtaatcatcttaacattgacaccaagatgaagagctctccgaatagtttcagcactgtcatgcct |
53076058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 127 - 359
Target Start/End: Original strand, 21980883 - 21981115
Alignment:
| Q |
127 |
ttaccagggaagactccggcaaatccatcagccttctcaatgagttcatcaattgggatggatgcaatggcagggtctgtgttatcaccgagaagagatg |
226 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| | || || | || ||||| || | |
|
|
| T |
21980883 |
ttaccagggaagactccagcaaatccatcagccttctcaataagttcatcaattggaattgatgcaatggctgcatcattggattggccaagaagggagg |
21980982 |
T |
|
| Q |
227 |
atgaagggtacatgttggtgcccattccaagtctgcgaccggtttcttttccaatggcaagttgatcaccagtgatcatcttaacattaacaccaaggtc |
326 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
21980983 |
atgaagggtacatgttggttcccattccaagtctgcgaccagtttcttttccaatggcaagttgatcgccagtgatcatcttaacattgacaccgaggtc |
21981082 |
T |
|
| Q |
327 |
aagagcacatcgaatggtctcagcactatcatg |
359 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||||| |
|
|
| T |
21981083 |
aagagcgcgacgaatagtctcagcactgtcatg |
21981115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 45197738 - 45197787
Alignment:
| Q |
127 |
ttaccagggaagactccggcaaatccatcagccttctcaatgagttcatc |
176 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| || ||||| |
|
|
| T |
45197738 |
ttaccagggaagacaccagcaaatccatcagccttctcaataagctcatc |
45197787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 15868518 - 15868457
Alignment:
| Q |
301 |
atcatcttaacattaacaccaaggtcaagagcacatcgaatggtctcagcactatcatgcct |
362 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| | || |||||| |||||||| |||||||| |
|
|
| T |
15868518 |
atcatcttaacatttacaccaagattaagagctcttctaatggtttcagcactgtcatgcct |
15868457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 1497435 - 1497505
Alignment:
| Q |
294 |
accagtgatcatcttaacattaacaccaaggtcaagagcacatcgaatggtctcagcactatcatgccttg |
364 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||| || | || ||| || ||||||||||||||||||| |
|
|
| T |
1497435 |
accagtaatcatcttaacattcacaccaaggttaagtgctcttctaattgtttcagcactatcatgccttg |
1497505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 1461946 - 1461881
Alignment:
| Q |
294 |
accagtgatcatcttaacattaacaccaaggtcaagagcacatcgaatggtctcagcactatcatg |
359 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| |||||||| | || ||| || |||||||||||||| |
|
|
| T |
1461946 |
accagtaatcatcttgacattcacaccaagttcaagagctcttctaatcgtttcagcactatcatg |
1461881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 28626670 - 28626602
Alignment:
| Q |
294 |
accagtgatcatcttaacattaacaccaaggtcaagagcacatcgaatggtctcagcactatcatgcct |
362 |
Q |
| |
|
|||||| |||||||||||||| |||||||| | |||||| | ||||| || |||||||| |||||||| |
|
|
| T |
28626670 |
accagtaatcatcttaacattgacaccaagatgaagagctctccgaatagtttcagcactgtcatgcct |
28626602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 50275753 - 50275685
Alignment:
| Q |
294 |
accagtgatcatcttaacattaacaccaaggtcaagagcacatcgaatggtctcagcactatcatgcct |
362 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||| | | ||||| ||||||||||||||||| |
|
|
| T |
50275753 |
accagtaatcatcttaacattcacaccaaggttcagagctcttgtgatggtttcagcactatcatgcct |
50275685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University