View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9544_low_5 (Length: 347)
Name: NF9544_low_5
Description: NF9544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9544_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 12021761 - 12021425
Alignment:
| Q |
1 |
aagttcttctacttaactactttaataacagaatttaatttnnnnnnnntattttaccttagtattgagtttagttattgattttcttaagaagaattca |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12021761 |
aagttcttctacttaactacttcaataacagaattttatttaaaaaaa-tattttaccttagtattgagtttagttactgattttcttaagaagaattca |
12021663 |
T |
|
| Q |
101 |
ttctttagagaacaaataaaatgagacggagtgagtatatgatactattagttgtttatattcgaaaatttagcggagattcctaatctagcacctacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
12021662 |
ttctttagagaacaaataaaatgagacggagtgagtatatgatactattagttgtttatattcgaaaatttagctgagattcctaatccagcacctacct |
12021563 |
T |
|
| Q |
201 |
gatatcttccataaaaagttgtttgggattttctatcaatccagatattgacacactgtatctgctctgccaatcatgtcataagaaaagaagttaaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12021562 |
gatatcttccataaaaagttgtttgggattttctatcaatccagatattgacacactgtatctgctctgccaaacatgtcataagaaaagaagttaaaat |
12021463 |
T |
|
| Q |
301 |
tcgtcgacagtgaacaccagtgaccaaagaagtataat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12021462 |
tcgtcgacagtgaacaccagtgaccaaagaagtataat |
12021425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University