View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9544_low_6 (Length: 320)
Name: NF9544_low_6
Description: NF9544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9544_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 21228389 - 21228566
Alignment:
| Q |
47 |
ctcaattgaatcaaactgtggcaagtatttgtgagggattctcaaatatcgggacttcgacatcaattgattgtcacagtcaagtttgtatttcaagctc |
146 |
Q |
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| T |
21228389 |
ctcaattgaatcaaactgtagcaagtatttgtgagggattctcaaatatcgggacttggacatcaattgattgtcacagtcaagtttgtatttcaagctc |
21228488 |
T |
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| Q |
147 |
aaaaagttccttgacatcccttttgattcaagtgggaatgagctgcgatgtcaccaacattcttacagaaaatatttt |
224 |
Q |
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| T |
21228489 |
aaaaagttccttgacatcccttttgattcaaatgggaatgagctgcgatgtcaccaacattcttacagaaaatatttt |
21228566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 21228591 - 21228679
Alignment:
| Q |
223 |
ttacatgtccaaacacaaacctctctatgtttgtttgtttatatatcaaacatctattgttaaaatcaagtaatctgataaagtattat |
311 |
Q |
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| T |
21228591 |
ttacttgtccaaacacaaacctcactatgtttgtttgtttatatatcaaacatctatagttaaaatcaagtaatctgataaagtattat |
21228679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 7885071 - 7884922
Alignment:
| Q |
75 |
ttgtgagggattctcaaatatcgggacttcgacatcaattgattgtcacagtcaagtttgtatttcaagctcaaaaagttccttgacatcccttttgatt |
174 |
Q |
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| T |
7885071 |
ttgtgagggattctcaaatattgagacttcagcatcaaattttcgtcgcactcaagtttgtatttccagctcaaaaaattcagtaacttcccttttgatt |
7884972 |
T |
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| Q |
175 |
caagtgggaatgagctgcgatgtcaccaacattcttacagaaaatatttt |
224 |
Q |
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| T |
7884971 |
gaaatgggagtgagctgcgatgtcgcaaacattcttagagaaaatatttt |
7884922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 34724176 - 34724090
Alignment:
| Q |
138 |
ttcaagctcaaaaagttccttgacatcccttttgattcaagtgggaatgagctgcgatgtcaccaacattcttacagaaaatatttt |
224 |
Q |
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| T |
34724176 |
ttcaagctcacaaaattccttgacatcactttttattcaaattggaatgaactgccgtgtcactaatactcttaaagaaaacatttt |
34724090 |
T |
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