View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9544_low_7 (Length: 276)
Name: NF9544_low_7
Description: NF9544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9544_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 34526209 - 34526016
Alignment:
| Q |
30 |
agaaaaaatgttatcaaacaggtcttttttgtcgcatgatcttataagctataagctcaacagagtcttagttgtttggtttcatggtctggtttgttaa |
129 |
Q |
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| T |
34526209 |
agaaaaaatgttatcaaacaggtcttttttgtcgcatgatcttataagctataagctcaacagagtgttagttgtttggtttcatggtctggtttgttaa |
34526110 |
T |
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| Q |
130 |
agtaagatgtagtagtaggattttgtcataggttgaaattgaagttttgcggtaatgatatgaaccttaatacactataacactacccatatcc |
223 |
Q |
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| T |
34526109 |
agtaagatgtagcagtaggattttgtcataggttgaaattgaaattttgcggtaatgatatgaaccttaatacactataacactacccatatcc |
34526016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 2110931 - 2110862
Alignment:
| Q |
16 |
ataagctcgtgagaagaaaaaatgttatcaaacaggtcttt-tttgtcgcatgatcttataagctataagct |
86 |
Q |
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| T |
2110931 |
ataagctcgtgagaa--aaaaatgttaacaaacaggtccttctttgtcatatgagcttataagctataagct |
2110862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 31677148 - 31677101
Alignment:
| Q |
42 |
atcaaacaggtcttttttgtcgcatgatcttataagctataagctcaa |
89 |
Q |
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| T |
31677148 |
atcaaacaggtcttttttgtcaaattagcttataagctataagctcaa |
31677101 |
T |
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