View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9544_low_9 (Length: 252)

Name: NF9544_low_9
Description: NF9544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9544_low_9
NF9544_low_9
[»] chr5 (5 HSPs)
chr5 (1-239)||(30271652-30271890)
chr5 (147-237)||(29360435-29360525)
chr5 (5-80)||(29360332-29360407)
chr5 (147-212)||(29587669-29587734)
chr5 (153-194)||(28735824-28735865)
[»] chr8 (3 HSPs)
chr8 (146-196)||(5071682-5071732)
chr8 (159-209)||(28478065-28478115)
chr8 (148-200)||(18374267-18374319)
[»] chr2 (2 HSPs)
chr2 (159-205)||(22556234-22556280)
chr2 (156-205)||(32199512-32199561)
[»] chr6 (1 HSPs)
chr6 (156-193)||(10338617-10338654)
[»] chr3 (1 HSPs)
chr3 (158-199)||(31652450-31652491)
[»] chr1 (1 HSPs)
chr1 (159-212)||(3523380-3523433)
[»] chr4 (1 HSPs)
chr4 (159-215)||(22402369-22402425)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30271890 - 30271652
Alignment:
Q  1 ctacagaatgatctttgagaggttcttcccccaggcaagttaatcaatcaactcttcttaatcggttgtaatgatataagctttgtagcactgctacttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  30271890 ctacagaatgatctttgagaggttcttcccccaggcaagttattcaatcaactctttttaatcggttgtaacgatataagctttgtagcactgctacttc 30271791  T
Q  101 agattaaagatgtatatggtgtttgacacgtgacggtgttggccgctgacatatatgattacattcaatcacttctatattcttaaatcattaccggtgt 200  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30271790 agattaaaggtgtatatggtgtttgacacgtgatggtgttggccgctgacatatatgattacattcaatcacttctatattcttaaatcattactggtgt 30271691  T
Q  201 ttacgtgtcagtatcaggtcgtatttggtgtttgtgtct 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30271690 ttacgtgtcagtatcaggtcgtatttggtgtttgtgtct 30271652  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 29360435 - 29360525
Alignment:
Q  147 tgacatatatgattacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagtatcaggtcgtatttggtgtttgtgt 237  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||    
T  29360435 tgacatatatgattacattcaatcacttttatattcttaaatcattactggtgtttacgtgtcggtatcagtttgtatttggtgtttgtgt 29360525  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 29360332 - 29360407
Alignment:
Q  5 agaatgatctttgagaggttcttcccccaggcaagttaatcaatcaactcttcttaatcggttgtaatgatataag 80  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||  |||||||  |||||||    
T  29360332 agaatgatctttgagaggttcttccctcaggcaagttaatcaatcaacacttcttaatttgttgtaaccatataag 29360407  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 29587734 - 29587669
Alignment:
Q  147 tgacatatatgattacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagt 212  Q
    |||||||| || ||||||| ||||||||| || ||||||||| |||||||||||||||||| ||||    
T  29587734 tgacatatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagt 29587669  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 28735824 - 28735865
Alignment:
Q  153 atatgattacattcaatcacttctatattcttaaatcattac 194  Q
    |||| ||||||||||||||||||||| ||||||||| |||||    
T  28735824 atataattacattcaatcacttctattttcttaaattattac 28735865  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 5071732 - 5071682
Alignment:
Q  146 ctgacatatatgattacattcaatcacttctatattcttaaatcattaccg 196  Q
    |||||| |||||||||||||||||||||| ||| ||||||| | |||||||    
T  5071732 ctgacacatatgattacattcaatcacttgtattttcttaagttattaccg 5071682  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 28478065 - 28478115
Alignment:
Q  159 ttacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtc 209  Q
    |||||||||||||||||||| || |||||| ||||| ||||| ||||||||    
T  28478065 ttacattcaatcacttctatttttttaaattattacgggtgtctacgtgtc 28478115  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 18374267 - 18374319
Alignment:
Q  148 gacatatatgattacattcaatcacttctatattcttaaatcattaccggtgt 200  Q
    ||||||||||||| ||||||||||| |  || ||||||||| |||||||||||    
T  18374267 gacatatatgattgcattcaatcacattcattttcttaaattattaccggtgt 18374319  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 22556280 - 22556234
Alignment:
Q  159 ttacattcaatcacttctatattcttaaatcattaccggtgtttacg 205  Q
    |||||||||||||||||||| ||||||||| |||||| |||| ||||    
T  22556280 ttacattcaatcacttctattttcttaaattattacctgtgtctacg 22556234  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 32199561 - 32199512
Alignment:
Q  156 tgattacattcaatcacttctatattcttaaatcattaccggtgtttacg 205  Q
    ||||||||||| | ||||| ||| ||||||||| ||||||||||||||||    
T  32199561 tgattacattcgaccacttttattttcttaaattattaccggtgtttacg 32199512  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 10338654 - 10338617
Alignment:
Q  156 tgattacattcaatcacttctatattcttaaatcatta 193  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  10338654 tgattacattcaatcacttctattttcttaaattatta 10338617  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 31652491 - 31652450
Alignment:
Q  158 attacattcaatcacttctatattcttaaatcattaccggtg 199  Q
    ||||||||||||||||||||| ||||||||| |||| |||||    
T  31652491 attacattcaatcacttctattttcttaaattattatcggtg 31652450  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 3523433 - 3523380
Alignment:
Q  159 ttacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagt 212  Q
    |||||||||||||||||||| || | |||| |||| |||||| |||||||||||    
T  3523433 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagt 3523380  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 22402425 - 22402369
Alignment:
Q  159 ttacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagtatc 215  Q
    |||||||||||||||||||| |||| || | ||||||||| | ||| ||||||||||    
T  22402425 ttacattcaatcacttctattttctcaatttattaccggtctctacatgtcagtatc 22402369  T

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