View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9545_high_1 (Length: 463)
Name: NF9545_high_1
Description: NF9545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9545_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 87 - 449
Target Start/End: Original strand, 2225034 - 2225396
Alignment:
| Q |
87 |
cctgcaatttatcaagatactgaggttgcccaagtcctttcttaatagtaccagtaagctccaataaccgatcagcaagagtagattttccatgatcaac |
186 |
Q |
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| T |
2225034 |
cctgcaatttatcaagatactgaggttgcccaagtcctttcttaatagtaccagtaagctccaataaccgatcagcaagagtagattttccatgatcaac |
2225133 |
T |
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| Q |
187 |
atgtgcaatgattgaaaaatttctcacaagctctggtgggtactgactcaaatctataatggctttttctttggtgtagttttggcgtgactgtgtacag |
286 |
Q |
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| T |
2225134 |
atgtgcaatgattgaaaaatttctcacaagctctggtgggtactgactcaaatctataatggctttttctttggtgtagttttggcgtgactgtgtacag |
2225233 |
T |
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| Q |
287 |
aaaagtgcacgtgtaatggaaaatctttcatgggttattctgtttgataaagggttgaaattgaagaacaatgaaacgtaatttgattgttttaaggttt |
386 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| |
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| T |
2225234 |
aaaagtgcacgtgtaatggaaaatcgttcatgggttattctacttgataaagggttgaaattgaataacaatgaaacatagtttgattgttttaaggttt |
2225333 |
T |
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| Q |
387 |
ttgatgcttttctaagaaaacccatttcgggttttttgaggttgtttggttactgaatctgtg |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2225334 |
ttgatgcttttctaagaaaacccatttcgggttttttgaggttgtttggttactgaatctgtg |
2225396 |
T |
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