View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9545_low_10 (Length: 203)
Name: NF9545_low_10
Description: NF9545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9545_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 22080819 - 22080656
Alignment:
| Q |
18 |
atttttccattttattttcgatttcacagctcaagcatttattaattcaatctcattttgttccgnnnnnnnncttcccatttttcagtttccttcaagc |
117 |
Q |
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| T |
22080819 |
atttttccattttattttcgatttcacagctcaagcatttattaattgaatctcattttgttccgttttt----ttcccatttttcaggttccttcaagc |
22080724 |
T |
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| Q |
118 |
attcttcatcctggtaaatttgttttacattttttcaattccaatttttaggtcatttcttgcaatgt |
185 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |
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| T |
22080723 |
attcttcatcctggtaaatttgttttacatttttccagttccaatttttagatcatttcttgcaatgt |
22080656 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 1521980 - 1522017
Alignment:
| Q |
96 |
catttttcagtttccttcaagcattcttcatcctggta |
133 |
Q |
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|||||| ||| ||||||||||||||||||||||||||| |
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| T |
1521980 |
cattttgcaggttccttcaagcattcttcatcctggta |
1522017 |
T |
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