View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9545_low_3 (Length: 441)
Name: NF9545_low_3
Description: NF9545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9545_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 25431277 - 25431689
Alignment:
| Q |
13 |
cagatgaaggtcaaaacaataatgtaaggtcacacagaaacaaactgattccta--agactagtagattgacaacttacttctgatgatgagataggtag |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25431277 |
cagatgaaggtcaaaacatcaatgtaaggtcacacagaaacaaactgattcctataagactagtagattgacaacttatttctgatgatgagataggtag |
25431376 |
T |
|
| Q |
111 |
tgctggtgaactaatgaattttgcaatgctagtagatgtagaaccaatttattacataatagcaatgcaagacaaaacctagaaggaagccatgataaaa |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
25431377 |
tgatggtgaactaatgaattttgcaatgctagcagatgtagaaccaatttattacataatagcaatgcaagacaaagcccagaaggaagccatgataaaa |
25431476 |
T |
|
| Q |
211 |
taaccaaagtcaattgagaataatcaaacatgtgaactaatcaagttaccaagcggtaataaatctattgatgttaaatggattttcaagctaaaactaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25431477 |
taaccaaagtcaattgagaataatcaaacatgtgaactaatcaagttaccgagcggtaataaatctattgatgttaaatggattttcaagctaaaactga |
25431576 |
T |
|
| Q |
311 |
acctttatgagaagattgagaagcatgaacctatactcgtggccaaaggattcttacaaagtgaaggctatgaataatcaagtattatcggtagttgcaa |
410 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
25431577 |
acctttatgagaagattgagaagcacgaacctagactcgtgaccaaaggattcttacaaagtgaaggctatgaataatgaagtattatgggtagttgcaa |
25431676 |
T |
|
| Q |
411 |
gtcatgaaactat |
423 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25431677 |
gtcatgaaactat |
25431689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University