View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9545_low_5 (Length: 369)
Name: NF9545_low_5
Description: NF9545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9545_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 25430905 - 25431267
Alignment:
| Q |
7 |
tttggtgttaagcattggatattgtagcttacatattgaatagatgtcccactaagaagataaaaactcaagttcctgaacaagtttgatcaagaagaaa |
106 |
Q |
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| T |
25430905 |
tttggagttaagcattggatactgtagcttacatattgaatagatgtcccactaagaagataaaaactcaagttcctgaacaagtttggtcaagaagaaa |
25431004 |
T |
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| Q |
107 |
gtcatcggttgctcatcacagagtagttggttctttataatgtaagtgtatcccttatgctatnnnnnnnngctagaagacagcagcgagcctatgatca |
206 |
Q |
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| T |
25431005 |
gtcatcggttgctcatcacagagtagttggttctttataatgtaagtgtatcccttatgctataaaaaaaaattagaagacaacagcgagcctataatca |
25431104 |
T |
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| Q |
207 |
ttgtaggttatcacaaaacttggagcatacagactactcaacctgttaacaatgaacactgggactgaaaaacaaatgaatacaatgtctctactaagaa |
306 |
Q |
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| T |
25431105 |
ttgtaggttatcacaaaacttggagcatacagactactcaacccgttaacaatgaacactgggactggaaaaaaaatgaatacaatgtctctactaagaa |
25431204 |
T |
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| Q |
307 |
cattgtaattgaagaaagccacacaaataaggagctcacaatcactaaaagtagtgaatgaag |
369 |
Q |
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| T |
25431205 |
cattgtaattgaagaaagccacacaaataaggagctcactatcactaaaagtagtgaatgaag |
25431267 |
T |
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