View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9546_low_11 (Length: 303)
Name: NF9546_low_11
Description: NF9546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9546_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 15545706 - 15545433
Alignment:
| Q |
11 |
tggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacattttctctgatttgtagattaaactatgatcttga |
110 |
Q |
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| T |
15545706 |
tggtggtgggtctgaaagtgcactaggattcattttgtacatggaaagaagtcttgttgcatacattttctctgatttgtagattaaactatgatcttga |
15545607 |
T |
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| Q |
111 |
agattaatcaatatatgtttatgaatgtacctgtatcctttatatacttcatatttcttatccatg-ttgaactttgaacgttaattaatatggataatt |
209 |
Q |
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| T |
15545606 |
agattaatcaatatatgtttatgaatgtacctgtatcctttatatacttcatatttcttatccatgtttgaactttgaacg----ttaatatggataatt |
15545511 |
T |
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| Q |
210 |
ctcatttgtgaggcagtgactaattcatgataatgggtgacgtcttctgtacatatgttgcacacgtacgtacatatc |
287 |
Q |
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| T |
15545510 |
ctcatttgtgaggcagtgactaattcatgataatgggtgacgtcttctgtacatatgttgcacacgtacgtacatatc |
15545433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 15528269 - 15528132
Alignment:
| Q |
11 |
tggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacattttctctgatttgtagattaaactatgatcttga |
110 |
Q |
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| T |
15528269 |
tggtggtgggtctgaaagagcactaggattctttttgtacatggaaagaagtcttgttgcatacattttcactgatttgtagattaaattatgatcttga |
15528170 |
T |
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| Q |
111 |
agattaatcaatatatgtttatgaatgtacctgtatcctttatatac |
157 |
Q |
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| T |
15528169 |
agat---------tatgtttatgaatgtacgtgaatcctttatatac |
15528132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 15517848 - 15517754
Alignment:
| Q |
11 |
tggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacattttctctgatttgtagattaaactatgat |
105 |
Q |
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| T |
15517848 |
tggtggtgggtctgaaagtgcactaggattctttttgtacatggaaagaagtcttgttgcatacattttctctgatttgtaaattaaactatgat |
15517754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 15522138 - 15522044
Alignment:
| Q |
11 |
tggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacattttctctgatttgtagattaaactatgat |
105 |
Q |
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| T |
15522138 |
tggtggtggatctgaaagagcactaggattccttttgtacatggaaagaagtcttgttgcatacattttcaccgatttataaattaaactatgat |
15522044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 15517739 - 15517649
Alignment:
| Q |
93 |
attaaactatgatcttgaagattaatcaatatatgtttatg------aatgtacctgtatcctttatatacttcatatttcttatccatgtt |
178 |
Q |
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| T |
15517739 |
attaaacaatgatcttgaagattaatcaatatatgtttatgtttatgaatgtacgtgtatcctt-atatacttcatatttcttatccatgtt |
15517649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 15550436 - 15550370
Alignment:
| Q |
11 |
tggtggtggatctgaaagagcactaggattcattttgtacatggaaagaagtctagttgcatacatt |
77 |
Q |
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| T |
15550436 |
tggtggttgatctgaaagagcactagggttccttttatacatggaaagaagtcttgctgcatacatt |
15550370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 15528023 - 15527990
Alignment:
| Q |
239 |
ataatgggtgacgtcttctgtacatatgttgcac |
272 |
Q |
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| T |
15528023 |
ataatgggtgacgtcttctatacatatgttgcac |
15527990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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