View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9546_low_12 (Length: 288)

Name: NF9546_low_12
Description: NF9546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9546_low_12
NF9546_low_12
[»] chr3 (10 HSPs)
chr3 (4-112)||(27999357-27999465)
chr3 (68-107)||(11409601-11409640)
chr3 (204-247)||(50037311-50037354)
chr3 (215-249)||(20276052-20276086)
chr3 (203-245)||(46483249-46483291)
chr3 (214-247)||(20370309-20370342)
chr3 (204-249)||(53996297-53996342)
chr3 (215-247)||(15881090-15881122)
chr3 (203-247)||(27999714-27999758)
chr3 (203-247)||(52453274-52453318)
[»] chr4 (9 HSPs)
chr4 (31-107)||(9329313-9329386)
chr4 (31-107)||(9383096-9383169)
chr4 (204-247)||(36490568-36490611)
chr4 (204-249)||(16743302-16743347)
chr4 (204-249)||(19854563-19854608)
chr4 (214-247)||(39171398-39171431)
chr4 (214-247)||(43374300-43374333)
chr4 (214-246)||(9196214-9196246)
chr4 (204-248)||(20383487-20383531)
[»] chr7 (4 HSPs)
chr7 (204-247)||(31038540-31038583)
chr7 (203-247)||(35142166-35142210)
chr7 (204-247)||(41527560-41527603)
chr7 (214-245)||(44473338-44473369)
[»] chr1 (8 HSPs)
chr1 (204-247)||(16967212-16967255)
chr1 (204-249)||(32944734-32944779)
chr1 (205-247)||(43021647-43021689)
chr1 (204-249)||(8253737-8253782)
chr1 (204-249)||(13054871-13054916)
chr1 (214-247)||(29701348-29701381)
chr1 (214-246)||(13778841-13778873)
chr1 (215-247)||(26755616-26755648)
[»] chr8 (4 HSPs)
chr8 (204-247)||(10871912-10871955)
chr8 (204-247)||(27718912-27718955)
chr8 (204-249)||(30427729-30427774)
chr8 (214-247)||(44654994-44655027)
[»] chr5 (4 HSPs)
chr5 (204-247)||(24485699-24485742)
chr5 (204-247)||(39610359-39610402)
chr5 (204-249)||(10515359-10515404)
chr5 (214-247)||(22394035-22394068)
[»] chr2 (5 HSPs)
chr2 (204-247)||(33063986-33064029)
chr2 (214-247)||(9799438-9799471)
chr2 (204-249)||(29734689-29734734)
chr2 (214-247)||(41187485-41187518)
chr2 (214-247)||(41204529-41204562)
[»] scaffold1694 (1 HSPs)
scaffold1694 (204-242)||(160-198)
[»] scaffold0007 (1 HSPs)
scaffold0007 (214-247)||(244479-244512)
[»] chr6 (2 HSPs)
chr6 (214-247)||(16130765-16130798)
chr6 (214-251)||(24827048-24827085)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 27999357 - 27999465
Alignment:
Q  4 ttgaggaggagcacagatactaaagtttcattggtttctgaggatcaacagcaagacaacgcaataatggtaaccatctcaccttcttctgtaatgttat 103  Q
    |||||||| | |||| ||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||||    
T  27999357 ttgaggagtaccacaaatactaaagttccattggtttctgaggatcaacaacaagagaacgtaataatggtaaccatctcaccttcttatgtaatgttat 27999456  T
Q  104 ttttatacc 112  Q
    |||||||||    
T  27999457 ttttatacc 27999465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 11409601 - 11409640
Alignment:
Q  68 taatggtaaccatctcaccttcttctgtaatgttattttt 107  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  11409601 taatggtaaccctctcaccttcttctgtgatgttattttt 11409640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 50037354 - 50037311
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||||    
T  50037354 ttgcatacattatgcattgtccataccaactgagctaagctcac 50037311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 20276086 - 20276052
Alignment:
Q  215 atgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||||||||||||||||||||||| |||||||    
T  20276086 atgcattgtccatatcaactaagctaaactcacaa 20276052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 46483291 - 46483249
Alignment:
Q  203 tttgcatacaatatgcattgtccatatcaactaagctaagctc 245  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  46483291 tttgcatatattatgcattgtccataccaactaagctaagctc 46483249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 20370309 - 20370342
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||||||||| ||||||||||||    
T  20370309 tatgcattgtccatatcaactgagctaagctcac 20370342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 53996342 - 53996297
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  53996342 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 53996297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 15881122 - 15881090
Alignment:
Q  215 atgcattgtccatatcaactaagctaagctcac 247  Q
    |||||||||||||||||||| ||||||||||||    
T  15881122 atgcattgtccatatcaacttagctaagctcac 15881090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 27999714 - 27999758
Alignment:
Q  203 tttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||| ||||| |||||| ||||| ||||||||||||    
T  27999714 tttgcatacaatacgcattatccataccaactgagctaagctcac 27999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 52453274 - 52453318
Alignment:
Q  203 tttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    |||||||| | |||||||||||| ||| |||||||||||||||||    
T  52453274 tttgcatatattatgcattgtccctattaactaagctaagctcac 52453318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 9329386 - 9329313
Alignment:
Q  31 tcattggtttctgaggatcaacagcaagacaacgcaataatggtaaccatctcaccttcttctgtaatgttattttt 107  Q
    |||||||||||||||||||||| ||| ||||||   |||||||||||| ||| |||||||||||| |||||||||||    
T  9329386 tcattggtttctgaggatcaaccgcaggacaac---ataatggtaaccctcttaccttcttctgtgatgttattttt 9329313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 9383169 - 9383096
Alignment:
Q  31 tcattggtttctgaggatcaacagcaagacaacgcaataatggtaaccatctcaccttcttctgtaatgttattttt 107  Q
    |||||||||||||||||||||| ||| ||||||   |||||||||||| ||| |||||||||||| |||||||||||    
T  9383169 tcattggtttctgaggatcaaccgcaggacaac---ataatggtaaccctcttaccttcttctgtgatgttattttt 9383096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 36490611 - 36490568
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||    
T  36490611 ttgcatacattatgcattgtccataccaactaagttaagctcac 36490568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 16743302 - 16743347
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | |||||||| |||||||||||| ||||||||||||||    
T  16743302 ttgcatatattatgcattatccatatcaactgagctaagctcacaa 16743347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 19854608 - 19854563
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  19854608 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 19854563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 39171398 - 39171431
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||||||||| ||||||||||||    
T  39171398 tatgcattgtccatatcaactgagctaagctcac 39171431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 43374300 - 43374333
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||||||||| ||||||||||||    
T  43374300 tatgcattgtccatatcaactgagctaagctcac 43374333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 9196246 - 9196214
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctca 246  Q
    |||||||||||||||||||||||| ||||||||    
T  9196246 tatgcattgtccatatcaactaagttaagctca 9196214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 20383531 - 20383487
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcaca 248  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||||    
T  20383531 ttgcatatattatgcattgtccataccaactgagctaagctcaca 20383487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 31038540 - 31038583
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  31038540 ttgcatacaatatgcattgtccataccaactgagctaagctcac 31038583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 35142166 - 35142210
Alignment:
Q  203 tttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||    
T  35142166 tttgcatatattatgcattgtccatatcaactgagctaagctcac 35142210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 41527603 - 41527560
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||    
T  41527603 ttgcatatattatgcattgtccataccaactaagctaagctcac 41527560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 44473338 - 44473369
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctc 245  Q
    ||||||||||||||||||||||||||||||||    
T  44473338 tatgcattgtccatatcaactaagctaagctc 44473369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 16967212 - 16967255
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  16967212 ttgcatatattatgcattgtccatatcaactaagctaagctcac 16967255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 32944779 - 32944734
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||    
T  32944779 ttgcatatattatgcattgtccataccaactaagctaagctcacaa 32944734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 43021647 - 43021689
Alignment:
Q  205 tgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    |||||| |||||||||||||| || ||||||||||||||||||    
T  43021647 tgcataaaatatgcattgtccctaccaactaagctaagctcac 43021689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 8253782 - 8253737
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  8253782 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 8253737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 13054916 - 13054871
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | |||||||||||| || ||||||||||||||||||||    
T  13054916 ttgcatatattatgcattgtccctaccaactaagctaagctcacaa 13054871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 29701348 - 29701381
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    |||||||||||||||||||||||| |||||||||    
T  29701348 tatgcattgtccatatcaactaagttaagctcac 29701381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 13778841 - 13778873
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctca 246  Q
    ||||||| |||||||||||||||||||||||||    
T  13778841 tatgcatcgtccatatcaactaagctaagctca 13778873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 26755648 - 26755616
Alignment:
Q  215 atgcattgtccatatcaactaagctaagctcac 247  Q
    |||||||||||||||||||| ||||||||||||    
T  26755648 atgcattgtccatatcaactgagctaagctcac 26755616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 10871912 - 10871955
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||    
T  10871912 ttgcatacattatgcattgtccataccaactaaactaagctcac 10871955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 27718912 - 27718955
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  27718912 ttgcatatattatgcattgtccatatcaactgagctaagctcac 27718955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 30427774 - 30427729
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  30427774 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 30427729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 44655027 - 44654994
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||| ||||||||||||||||||||||    
T  44655027 tatgcattgtctatatcaactaagctaagctcac 44654994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 24485742 - 24485699
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||    
T  24485742 ttgcatatattatgcattgtccataccaactaagctaagctcac 24485699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 39610359 - 39610402
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  39610359 ttgcatatattatgcattgtccatatcaactgagctaagctcac 39610402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 10515404 - 10515359
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | ||| |||||||||||||||||||| |||||||||||    
T  10515404 ttgcatatattattcattgtccatatcaactaagttaagctcacaa 10515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 22394068 - 22394035
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||||||||| ||||||||||||    
T  22394068 tatgcattgtccatatcaactgagctaagctcac 22394035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 33064029 - 33063986
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  33064029 ttgcatatattatgcattgtccatatcaactgagctaagctcac 33063986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 9799438 - 9799471
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    |||||||||||||| |||||||||||||||||||    
T  9799438 tatgcattgtccatttcaactaagctaagctcac 9799471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 29734734 - 29734689
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 249  Q
    ||||||| | ||||||||||||||||||||| |||||| |||||||    
T  29734734 ttgcatatattatgcattgtccatatcaactgagctaaactcacaa 29734689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 41187485 - 41187518
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  41187485 tatgcattgtccataccaactaagctaagctcac 41187518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 41204529 - 41204562
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  41204529 tatgcattgtccataccaactaagctaagctcac 41204562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1694 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 198 - 160
Alignment:
Q  204 ttgcatacaatatgcattgtccatatcaactaagctaag 242  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  198 ttgcatacattatgcattgtccatatcaactgagctaag 160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 244512 - 244479
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||||||||| ||||||||||||    
T  244512 tatgcattgtccatatcaactgagctaagctcac 244479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 16130798 - 16130765
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcac 247  Q
    ||||||||||||||| ||||||||||||||||||    
T  16130798 tatgcattgtccataccaactaagctaagctcac 16130765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 24827085 - 24827048
Alignment:
Q  214 tatgcattgtccatatcaactaagctaagctcacaatg 251  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  24827085 tatgcattgtccatatcaactgagctaagctaacaatg 24827048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University