View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9546_low_16 (Length: 241)

Name: NF9546_low_16
Description: NF9546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9546_low_16
NF9546_low_16
[»] scaffold1652 (3 HSPs)
scaffold1652 (19-222)||(36-239)
scaffold1652 (19-74)||(265-320)
scaffold1652 (19-75)||(342-398)
[»] scaffold0902 (2 HSPs)
scaffold0902 (19-211)||(3570-3762)
scaffold0902 (19-74)||(3477-3532)
[»] scaffold0002 (2 HSPs)
scaffold0002 (19-221)||(165070-165260)
scaffold0002 (19-86)||(165271-165338)
[»] chr6 (6 HSPs)
chr6 (19-221)||(14248466-14248656)
chr6 (19-155)||(14317028-14317164)
chr6 (19-86)||(14248388-14248455)
chr6 (179-221)||(14317161-14317203)
chr6 (19-100)||(14351655-14351736)
chr6 (19-81)||(14316950-14317012)
[»] scaffold1176 (3 HSPs)
scaffold1176 (19-86)||(112-179)
scaffold1176 (164-220)||(1254-1310)
scaffold1176 (19-75)||(45-101)
[»] chr4 (3 HSPs)
chr4 (23-88)||(37245129-37245194)
chr4 (137-221)||(37245288-37245375)
chr4 (23-75)||(37242112-37242164)


Alignment Details
Target: scaffold1652 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 239 - 36
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagatgaagcagtcggtgaagaagaggga 118  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||    
T  239 aggcgatggtacttgagatggaggagtagagatcgacgatggagagacagcaggagcagcagcgggagaaccagatgaagcagtcgttaaagaagaggga 140  T
Q  119 gcactattcacagctaccggaggagacgccactggtgtgtgagcggagggagaaatagcaggtgatggaaacggagaagagttgggtgatgatggtggtg 218  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  139 gcactattcacagttaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttgggtgatgatggtggtg 40  T
Q  219 atct 222  Q
    ||||    
T  39 atct 36  T

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Target: scaffold1652; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 320 - 265
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggag 74  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  320 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 265  T

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Target: scaffold1652; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 398 - 342
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagc 75  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  398 aggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagc 342  T

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Target: scaffold0902 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 3570 - 3762
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagatgaagcagtcggtgaagaagaggga 118  Q
    ||||||||||||||||| ||||||  |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  3570 aggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaaccagatgaagcagttggtgaagaagaggga 3669  T
Q  119 gcactattcacagctaccggaggagacgccactggtgtgtgagcggagggagaaatagcaggtgatggaaacggagaagagttgggtgatgat 211  Q
    |||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  3670 gcactattcagaggtaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttgggggatgat 3762  T

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Target: scaffold0902; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 3477 - 3532
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggag 74  Q
    ||||| |||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  3477 aggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 3532  T

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Target: scaffold0002 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 165260 - 165070
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagatgaagcagtcggtgaagaagaggga 118  Q
    |||||||||| ||||||||||||| ||||| ||| | |||||||||||||||||||            |||||||  |||||| |||||||| |||||||    
T  165260 aggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag------------aaccagagaaagcagacggtgaaggagaggga 165173  T
Q  119 gcactattcacagctaccggaggagacgccactggtgtgtgagcggagggagaaatagcaggtgatggaaacggagaagagttgggtgatgatggtggtg 218  Q
    |||||||||| || |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||    
T  165172 gcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagactggggggatgatggtggtg 165073  T

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Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 165338 - 165271
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggag 86  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||  |||||||||||| |||| ||||    
T  165338 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag 165271  T

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Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 14248466 - 14248656
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagatgaagcagtcggtgaagaagaggga 118  Q
    |||||||||| ||||||||||||| ||||| ||| | |||||||||||||||||||            |||||||  |||||| |||||||| |||||||    
T  14248466 aggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag------------aaccagagaaagcagacggtgaaggagaggga 14248553  T
Q  119 gcactattcacagctaccggaggagacgccactggtgtgtgagcggagggagaaatagcaggtgatggaaacggagaagagttgggtgatgatggtggtg 218  Q
    |||||||||| || |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||    
T  14248554 gcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagactggggggatgatggtggtg 14248653  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 14317028 - 14317164
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagatgaagcagtcggtgaagaagaggga 118  Q
    |||||||||| |||||||||| || ||||| ||| | |||||||||||| |||||||  |||| ||||||||||| ||||||| |||||||| |||||||    
T  14317028 aggcgatggtccttgagatggtggggtagagatccatgatggagcgacaacaggagctgcagcaggagaaccagaggaagcagacggtgaaggagaggga 14317127  T
Q  119 gcactattcacagctaccggaggagacgccactggtg 155  Q
    |||||||||| || |||||||||||||||||||||||    
T  14317128 gcactattcagaggtaccggaggagacgccactggtg 14317164  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 14248388 - 14248455
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggag 86  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||  |||||||||||| |||| ||||    
T  14248388 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag 14248455  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 14317161 - 14317203
Alignment:
Q  179 ggtgatggaaacggagaagagttgggtgatgatggtggtgatc 221  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  14317161 ggtgatggaaacggagaagacttgggtgatgatggtggtgatc 14317203  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 14351655 - 14351736
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagatgaagca 100  Q
    ||||||||||||||||||||| |||||||| |  || |||||||  |||||||||||  |||||||||||||| | ||||||    
T  14351655 aggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagca 14351736  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 14316950 - 14317012
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagc 81  Q
    |||||| ||||||||||| ||||||||||| ||||| |||||||  ||| |||||||| ||||    
T  14316950 aggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagcagcagc 14317012  T

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Target: scaffold1176 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 179 - 112
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggag 86  Q
    |||||||||||||||||||||||||||||| ||||| |||||||  |||||||||||| |||| ||||    
T  179 aggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagcagcagcaggag 112  T

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Target: scaffold1176; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 1310 - 1254
Alignment:
Q  164 gagggagaaatagcaggtgatggaaacggagaagagttgggtgatgatggtggtgat 220  Q
    ||||||||||| ||||| ||||||||||||||||| ||||| |||| || |||||||    
T  1310 gagggagaaatcgcaggagatggaaacggagaagacttgggggatgttgatggtgat 1254  T

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Target: scaffold1176; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 101 - 45
Alignment:
Q  19 aggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagc 75  Q
    |||||||||| ||||||||||||| ||||| ||| | |||||| ||||| |||||||    
T  101 aggcgatggtccttgagatggaggggtagagatccaggatggatcgacaacaggagc 45  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 37245129 - 37245194
Alignment:
Q  23 gatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaa 88  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||||||||  || ||||||||    
T  37245129 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 37245194  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 37245288 - 37245375
Alignment:
Q  137 ggaggagacgccactggtgtgtgagcggagggagaaatagcaggtgatggaaacggagaagagttggg---tgatgatggtggtgatc 221  Q
    |||| ||| |||||||||| || |||||||||||||||    |||||||||||||||||| |  ||||   |||||||||||||||||    
T  37245288 ggagcagatgccactggtgagttagcggagggagaaattattggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatc 37245375  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 37242112 - 37242164
Alignment:
Q  23 gatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagc 75  Q
    ||||||||||||||||||||||| || |||||| ||||||  || ||||||||    
T  37242112 gatggtgcttgagatggaggagttgagatcgacaatggagtaactgcaggagc 37242164  T

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