View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9546_low_2 (Length: 885)
Name: NF9546_low_2
Description: NF9546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9546_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 7e-67; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 600 - 844
Target Start/End: Complemental strand, 28656335 - 28656097
Alignment:
| Q |
600 |
ggacatgcagggaaagtgcagtacctctatagtacaacaactaggatatacatatatggaacatatctagtgaggatgacatttttatgtgagaataaaa |
699 |
Q |
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| T |
28656335 |
ggacatgcagggaaagtgtagcacctcaataatacaac---taggatatacatctatggcacatagctagtgaggatgacatttttatgtgagaataaaa |
28656239 |
T |
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| Q |
700 |
ggaataattagtagtcattagattaaaatgtgtggatgaaattaaaaggttgattaagtaagtcctgagc-tatattctatcacgcacatgttttcttct |
798 |
Q |
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| T |
28656238 |
agaataattag-agtcataagattaaaatgtgtgaataaaattaaaaggttgattaagtgagtcctgaacttatatactttcacgcacatgttttcttct |
28656140 |
T |
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| Q |
799 |
cactcatcttcttcctcatgacccattgactcccaaacccccttca |
844 |
Q |
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| T |
28656139 |
cactcatcttct---tcttgacccatcgactcccaaacctccttca |
28656097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 239 - 396
Target Start/End: Complemental strand, 28656914 - 28656757
Alignment:
| Q |
239 |
attaggcatgtctccgtctccgacacgtgttgtgtctgacactcattcaacacgtgtccattaattcagacaagtgtcccgaaaaatatcattttttctt |
338 |
Q |
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| T |
28656914 |
attaggcatgtctctatctccaacattcgttgtgtttgacactccgtcgacacgtgtccaacaattcagacaagtgtcccaaacaatatcattttttctt |
28656815 |
T |
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| Q |
339 |
tgctttaacacaccgtaaacacttcttggatacatctcagacacatctatggaagttt |
396 |
Q |
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| T |
28656814 |
tgctttgacacaccgtaaacactccttggacacatctcagacacatctacgaaagttt |
28656757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 33 - 225
Target Start/End: Complemental strand, 28657149 - 28656946
Alignment:
| Q |
33 |
caccagcaaatattctatcctttgaatgttggtatctcaatttcggattccac------tcccagatcaggagctttaggttgatagaactggatcatta |
126 |
Q |
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| T |
28657149 |
caccagtaaatattctatcctctgaatgttgatatctcaatttcggatttaacaacagctcccagattgggagctttaggttgatagaactggatcattg |
28657050 |
T |
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| Q |
127 |
tattggaaagaca--gaaagttttgataataacctttatc---tcttcacttgtgcctaagcgatacaagaacaaaaatcagaacacacgactacaggcc |
221 |
Q |
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| T |
28657049 |
tattggaaagacatggaaaattttgctaataacctctatctcttcttcacttgtgcccaagtgattcaggaacaaagatcataacacacgaatacatgcc |
28656950 |
T |
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| Q |
222 |
ccct |
225 |
Q |
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|||| |
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| T |
28656949 |
ccct |
28656946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 28656513 - 28656464
Alignment:
| Q |
507 |
tgtcaggtgt-gcttcatagatcacaacactcgctccctaataccactcc |
555 |
Q |
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| T |
28656513 |
tgtcaggtgttgcttcatagatcacaacactccctccctaataccactcc |
28656464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 431
Target Start/End: Complemental strand, 28656672 - 28656641
Alignment:
| Q |
400 |
gatgaatgaagatgaaagactatcatatcatg |
431 |
Q |
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| T |
28656672 |
gatgaatgaagatgaaagactatcatatcatg |
28656641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 661 - 747
Target Start/End: Complemental strand, 8172915 - 8172829
Alignment:
| Q |
661 |
catatctagtgaggatgacatttttatgtgagaataaaaggaataattagtagtcattagattaaaatgtgtggatgaaattaaaag |
747 |
Q |
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| T |
8172915 |
catatcaagtgagaataacatatttatgtgagaatgataggaataaataacaaccgttagattaaaatgtgtggctgagattaaaag |
8172829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 645 - 747
Target Start/End: Complemental strand, 27007056 - 27006954
Alignment:
| Q |
645 |
atatacatatatggaacatatctagtgaggatgacatttttatgtgagaataaaaggaataattagtagtcattagattaaaatgtgtggatgaaattaa |
744 |
Q |
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| T |
27007056 |
atatatatatatggggcatatcaaatgagaataacatatttatgtgagaatgataggaataaataacaatcattagattaaaatgtatggctgagattaa |
27006957 |
T |
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| Q |
745 |
aag |
747 |
Q |
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| T |
27006956 |
aag |
27006954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 43837105 - 43837183
Alignment:
| Q |
306 |
agacaagtgtcccgaaaaatatcattttttctttgctttaacacaccgtaaacacttcttggatacatctcagacacatc |
385 |
Q |
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| T |
43837105 |
agacaagtatcccagaaaatat-attttttctttgcttcaacacaccttatactctccttggatgcatctcaaacacatc |
43837183 |
T |
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