View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9546_low_3 (Length: 447)

Name: NF9546_low_3
Description: NF9546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9546_low_3
NF9546_low_3
[»] chr6 (12 HSPs)
chr6 (3-432)||(28529334-28529769)
chr6 (31-202)||(28086756-28086927)
chr6 (32-202)||(28056117-28056287)
chr6 (37-203)||(27906749-27906915)
chr6 (32-203)||(27926906-27927078)
chr6 (3-201)||(28012056-28012254)
chr6 (32-181)||(28026339-28026488)
chr6 (62-161)||(27892944-27893043)
chr6 (333-404)||(27926707-27926778)
chr6 (32-200)||(27995806-27995974)
chr6 (333-404)||(28056415-28056486)
chr6 (333-400)||(28087056-28087123)
[»] chr5 (2 HSPs)
chr5 (37-202)||(1435429-1435594)
chr5 (333-404)||(1435719-1435790)


Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 3 - 432
Target Start/End: Original strand, 28529334 - 28529769
Alignment:
Q  3 tggagaagcaaagggttttgggagagattttttctctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaac 102  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28529334 tggagatgccaagggttttgggagagattttttctctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaac 28529433  T
Q  103 aaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttatttaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28529434 aaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttatttaa 28529533  T
Q  203 tcgaaaaatatttcaatatgaaaatgccagtactctcctgctacnnnnnnnngttgt--aaatttactcaccatttcccattcattgtgtgcaggacttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||        |||||   ||||||||||||||||||||||||||||||||||||||||    
T  28529534 tcgaaaaatatttcaatatgaaaatgccagtactctcctgctactttcttttgttgttataatttactcaccatttcccattcattgtgtgcaggacttt 28529633  T
Q  301 aattgtattgctatcgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28529634 aattgtattgctattgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt 28529733  T
Q  401 ctcaatat----ctatgaagcaccgacacatacatg 432  Q
    ||||||||    ||||||||||||||||||| ||||    
T  28529734 ctcaatatctagctatgaagcaccgacacatgcatg 28529769  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 28086756 - 28086927
Alignment:
Q  31 tttttctctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctgg 130  Q
    ||||| |||||||||  ||||||| ||||||||||||| ||||||||  | ||| |||| ||||||||||||||  || ||||||| |||||| || | |    
T  28086756 tttttttctttctgcaattcatgtattcctggagttatgaaccctcatgcaaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcg 28086855  T
Q  131 caatttttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttatttaa 202  Q
    |||||||||| ||||| |||||||| |||||| | |||||| || |||||||||||||||| ||||| ||||    
T  28086856 caatttttgttgatccgttattttttttcttactctatgtggaggaggtatgattcttttcattttaattaa 28086927  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 28056117 - 28056287
Alignment:
Q  32 ttttctctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggc 131  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||||| ||| | || | ||||||||||||  || ||||||| ||||||||| |  |    
T  28056117 ttttttctttctgctcttcatgtattcctggagttatgaaccctcacacgaaagtcgtactacaatggaacaaggttttggccatattttgcatggtcac 28056216  T
Q  132 aatttttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttatttaa 202  Q
    ||||||||| ||||| |||||||| |||| | | |||||| | ||||| | ||||||||| ||||||||||    
T  28056217 aatttttgttgatccgttatttttcttctcactctatgtgaacaaggtttaattcttttcattttatttaa 28056287  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 27906749 - 27906915
Alignment:
Q  37 tctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaattt 136  Q
    |||||||||||||||||| |||| |||||||| ||||| ||| | | | || | |||||||||||||| ||  ||| ||| |||||| || | ||||||     
T  27906749 tctttctgctcttcatgtattccaggagttatgaacccacacgcgagaattatacaacaatggaacaagttgttggacatattttgcttggtcgcaattc 27906848  T
Q  137 ttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttatttaat 203  Q
    |||| ||||| |||||||| |||||| | |||||| | || ||||||||||||||||||||||||||    
T  27906849 ttgttgatcctttatttttgttcttattctatgtgaacaaagtatgattcttttccttttatttaat 27906915  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 27927078 - 27926906
Alignment:
Q  32 ttttctctttctgctcttcatgtgttcctggagttata-aaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctgg 130  Q
    |||| |||||||||||||||||  |||||| ||||||  || |||||  | ||| |||| ||||||||||||||  || ||||||| |||||| || | |    
T  27927078 ttttttctttctgctcttcatggattcctgaagttatggaatcctcaagcgaaagttgtacaacaatggaacaaggttttggccatattttgcttggtcg 27926979  T
Q  131 caatttttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttatttaat 203  Q
    |||||||| | |||||||||||||| |||||| | |||||| | ||||||| ||||||||| |||||||||||    
T  27926978 caatttttattgatccattatttttcttcttactctatgtgaacaaggtataattcttttcattttatttaat 27926906  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 28012056 - 28012254
Alignment:
Q  3 tggagaagcaaagggttttgggagagattttttctctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaac 102  Q
    |||||| || || |||||||| ||| |  |||| |||| ||||||||||||| |||||  |||||| |||||  ||  |||| |||| ||   |||||||    
T  28012056 tggagacgccaaaggttttggaagaaaacttttttcttcctgctcttcatgtattcctaaagttatgaaccccgactgtaaagttgtacacttatggaac 28012155  T
Q  103 aaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttattta 201  Q
    || ||| |||||||  ||||| |  | ||||||||||||||||| ||||||||||||| | | |||||| | |||||||| ||||||||||||||||||    
T  28012156 aagtttttggccataatttgctttgttgcaatttttgtggatcccttatttttattctcattctatgtgaacaaggtatgcttcttttccttttattta 28012254  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 28026339 - 28026488
Alignment:
Q  32 ttttctctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggc 131  Q
    |||| |||||||| ||||| ||| ||||||| ||||| ||||| ||  | ||| |||| |||||||||||||| ||| ||||||| ||||||||  | ||    
T  28026339 ttttttctttctgttcttcgtgtattcctggtgttatgaacccccatgcgaaagttgtacaacaatggaacaagtttttggccatattttgcatagtcgc 28026438  T
Q  132 aatttttgtggatccattatttttattcttaatatatgtgcagaaggtat 181  Q
    ||||| ||| ||||| |||||||| |||||| | |||||| | |||||||    
T  28026439 aatttatgttgatccgttatttttcttcttattctatgtgaacaaggtat 28026488  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 27892944 - 27893043
Alignment:
Q  62 gagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaatttttgtggatccattatttttattctt 161  Q
    |||||||||| || || | ||||||||| || |||||||| |||||| | || |||| |||| || |||||||||||||||||||||||||||| |||||    
T  27892944 gagttataaatccacataataaacttgtacatcaatggaataaattttttgcaatttgttgcttggtggcaatttttgtggatccattatttttcttctt 27893043  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 27926778 - 27926707
Alignment:
Q  333 aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca 404  Q
    |||||||||| | ||||||||||| | |||| |||| ||| |||| ||||||||||||||||||||||||||    
T  27926778 aacacttgttgtacttagaagcataactgatattgtgtatctcttgaacattcttctccaggtaatttctca 27926707  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 27995806 - 27995974
Alignment:
Q  32 ttttctctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggc 131  Q
    |||| ||||| |||||||||||| ||||| ||||||| |||||||||  |||| | || ||||||||||||| | || | || || | ||||    | ||    
T  27995806 ttttatctttttgctcttcatgtattcctagagttatgaaccctcactgtaaagtcgtacaacaatggaacacaatttttgctatatcttgctcagtcgc 27995905  T
Q  132 aatttttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttattt 200  Q
    ||||||| | ||||| |||||||| ||||||   |||||| | ||||||||||||||||| ||| ||||    
T  27995906 aattttttttgatccgttatttttcttcttatactatgtgaacaaggtatgattcttttcttttcattt 27995974  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 28056415 - 28056486
Alignment:
Q  333 aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca 404  Q
    |||||| ||| | ||||||||||| | |||| |||| ||| |||| ||||||||||||||||||||||||||    
T  28056415 aacactagttatacttagaagcataactgatgttgtgtatctcttgaacattcttctccaggtaatttctca 28056486  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 28087056 - 28087123
Alignment:
Q  333 aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt 400  Q
    |||||||||| | ||||||||||| |  ||| |||| ||| |||| ||||||||||||||||||||||    
T  28087056 aacacttgttgtacttagaagcataaccgatgttgtgtatctcttgaacattcttctccaggtaattt 28087123  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 1435429 - 1435594
Alignment:
Q  37 tctttctgctcttcatgtgttcctggagttataaaccctcacactaaacttgttcaacaatggaacaaatttctggccattttttgcatgctggcaattt 136  Q
    |||||||||||||||||| |||||||||| || ||||||||||| ||| |||| || ||||||||||| ||| ||||||| |||||| |||| |||||||    
T  1435429 tctttctgctcttcatgtattcctggagtgatgaaccctcacacaaaaattgtacagcaatggaacaagtttttggccatattttgcctgctcgcaattt 1435528  T
Q  137 ttgtggatccattatttttattcttaatatatgtgcagaaggtatgattcttttccttttatttaa 202  Q
    |||| ||||| |||||||| |||||| | |||||||| ||| | ||||||||||| ||||||||||    
T  1435529 ttgttgatcccttatttttcttcttactttatgtgcacaagttttgattcttttcattttatttaa 1435594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 1435719 - 1435790
Alignment:
Q  333 aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca 404  Q
    |||||||||||| |||||||||||   |||| |||| ||| || | ||||||||||| ||||||||||||||    
T  1435719 aacacttgttttacttagaagcatatttgatgttgtgtatctcctgaacattcttcttcaggtaatttctca 1435790  T

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