View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9546_low_9 (Length: 338)
Name: NF9546_low_9
Description: NF9546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9546_low_9 |
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| [»] scaffold0144 (1 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 16916739 - 16917060
Alignment:
| Q |
1 |
tgcataaactgtcgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatgacaaatgtgatgtacattgatgattcac |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
16916739 |
tgcataaactgtagtcaacttcctccacttggtaaattacctttgttaaccactctttatttatctcaaatgacaaatgtgaagtacattgatgattcac |
16916838 |
T |
|
| Q |
101 |
cttatgaaaaagcaaaagacaaggcttttccgtcattaagagaaatgacactatatgatttacctaatttaaagagggtgctgagaatcgaaggagtaga |
200 |
Q |
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| T |
16916839 |
cttatgaaatttcaaccgaaaacgcttttccgtcattaacggaaatgacactatatgatttacctaatttaaagagtgtgctgagaatcgaaggagtaga |
16916938 |
T |
|
| Q |
201 |
gatgctatcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttgaggaagtttatgttggaggaaaaact |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
16916939 |
gatgctctcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttaaggaagtttatgttggaggagaaact |
16917038 |
T |
|
| Q |
301 |
aaagagtttaatgctcatggtg |
322 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
16917039 |
gaagagtttaatgatcatggtg |
16917060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 16911544 - 16911849
Alignment:
| Q |
1 |
tgcataaactgtcgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatgacaaatgtgatgtacattgatgattcac |
100 |
Q |
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|||||||||||| | |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16911544 |
tgcataaactgtagccaacttcctccacttggtaaattaccttttttaaacactctttatctatctcaaatgacaaatgtgaagtacattgatgattcac |
16911643 |
T |
|
| Q |
101 |
cttatgaaaaagcaaaagacaaggcttttccgtcattaagagaaatgacactatatgatttacctaatttaaagagggtgctgagaatcgaaggagtaga |
200 |
Q |
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||||||||| ||| || || |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
16911644 |
cttatgaaatttcaaccgaaaatgcttttccgtcattaacggaaatgacactatttgatttacctaatttagagagggtgttgagaatcgaaggagtaga |
16911743 |
T |
|
| Q |
201 |
gatgctatcacaactttctaagttaagcattcagagtatccctatatttgaacttccaagccttccctctgttgaggaagtttatgttggaggaaaaact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
16911744 |
gatgctatcacaactttctaagttaagcattcagagtatccctcaatttgaacttccaagccttccctctgttaaggaagtttatgttggaggagaaact |
16911843 |
T |
|
| Q |
301 |
aaagag |
306 |
Q |
| |
|
||||| |
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|
| T |
16911844 |
gaagag |
16911849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 18807686 - 18807727
Alignment:
| Q |
19 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
60 |
Q |
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| T |
18807686 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
18807727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 18874683 - 18874724
Alignment:
| Q |
19 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
60 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18874683 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
18874724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16974872 - 16974935
Alignment:
| Q |
1 |
tgcataaactgtcgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatga |
73 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
16974872 |
tgcagaaactgtcgtcaacttcctcgacttggta---------gtttaaccactctttatctatctcaaatga |
16974935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 16837374 - 16837327
Alignment:
| Q |
19 |
cttcctccacttggtaaattaaattgtttaaccactctttatctatct |
66 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
16837374 |
cttcccccacttggtaaattaccttgtttaaccactctttatgtatct |
16837327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 16985987 - 16985936
Alignment:
| Q |
166 |
aatttaaagagggtgctgagaatcgaaggagtagagatgctatcacaacttt |
217 |
Q |
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|
||||||||||||||| | | | |||||||||||||||||||| ||||||||| |
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| T |
16985987 |
aatttaaagagggtgttaaaagtcgaaggagtagagatgctaacacaacttt |
16985936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 16842485 - 16842444
Alignment:
| Q |
19 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
60 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
16842485 |
cttcccccacttggtaaattaccttgtttaaccactctttat |
16842444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 16869608 - 16869664
Alignment:
| Q |
161 |
tacctaatttaaagagggtgctgagaatcgaaggagtagagatgctatcacaacttt |
217 |
Q |
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|
|||| |||||| |||||||| || | |||||||||||||||||||| ||||||||| |
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| T |
16869608 |
taccgaatttagagagggtgttggaagtcgaaggagtagagatgctaccacaacttt |
16869664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 3280 - 3358
Alignment:
| Q |
18 |
acttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatgacaaatgtgatgtacattgatgat |
96 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| | || | | ||||||||||||| |
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| T |
3280 |
acttcctccacttggtaaattaccttgtttaaccactctttatgtatctggaatgagagatttaaagtacattgatgat |
3358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 8021 - 7980
Alignment:
| Q |
19 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
60 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8021 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
7980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 38940981 - 38941038
Alignment:
| Q |
160 |
ttacctaatttaaagagggtgctgagaatcgaaggagtagagatgctatcacaacttt |
217 |
Q |
| |
|
||||| |||||| |||||||| || | |||||||||||||||||||| ||||||||| |
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|
| T |
38940981 |
ttaccaaatttagagagggtgttggaagtcgaaggagtagagatgctaccacaacttt |
38941038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 7696 - 7636
Alignment:
| Q |
157 |
gatttacctaatttaaagagggtgctgagaatcgaaggagtagagatgctatcacaacttt |
217 |
Q |
| |
|
|||||||| |||||| |||||||| || | ||||||||||||||||||| ||||||||| |
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| T |
7696 |
gatttaccaaatttagagagggtgttggaagccgaaggagtagagatgctaccacaacttt |
7636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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