View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_10 (Length: 361)
Name: NF9547_10
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_10 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 49872002 - 49871727
Alignment:
| Q |
1 |
gacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatcttaacaaa |
100 |
Q |
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| T |
49872002 |
gacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatcttaacaaa |
49871903 |
T |
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| Q |
101 |
attgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaactacccatgcag |
200 |
Q |
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| T |
49871902 |
attgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaactacccatgcag |
49871803 |
T |
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| Q |
201 |
gacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttggatataatcaatggtctttc |
276 |
Q |
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| T |
49871802 |
gacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttggatataatcaatggtctttc |
49871727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 49866071 - 49865796
Alignment:
| Q |
1 |
gacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatcttaacaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
49866071 |
gacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatattagaaaa |
49865972 |
T |
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| Q |
101 |
attgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaactacccatgcag |
200 |
Q |
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| T |
49865971 |
attgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttatatggatttgagaacacaactacccatgcag |
49865872 |
T |
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| Q |
201 |
gacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttggatataatcaatggtctttc |
276 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
49865871 |
aacaaaccatggctaaggttcttaaggcttctttggagctaactaacaatgctttggatataatcaatggactttc |
49865796 |
T |
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