View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9547_11 (Length: 356)
Name: NF9547_11
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 42 - 337
Target Start/End: Complemental strand, 46685438 - 46685143
Alignment:
| Q |
42 |
acctgtggcctattcaacatgcttaggctttggcgtcttcgtagagttagcgctatgttttctcggtaagattgaaacttgatagctttggtgcat--gt |
139 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46685438 |
acctatggcctattcaacatgcttaggctttggcgtcttcgtagagttagcgctatgttttctcggtaagattgaaacttgatagctttggtgcatatgt |
46685339 |
T |
|
| Q |
140 |
ttggatgagcgatgagattgataaaaagcacagtgagccagtcacaaattttccacaaaagctacactttgtagctttgcaaaatcacggtggctcacta |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46685338 |
ttggatgagcgatgagattgataaaaagca--gtgagccagtcacaaattttccacaaaagctacactttgtagctttgcaaaatcacggtggctcacta |
46685241 |
T |
|
| Q |
240 |
gatttttcaatctcgttgctcatctaaacatgcatttactcccataaaatcatgtatatattttgtttcctttttgtgtagtttatgaccgtaaatgt |
337 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46685240 |
gatttttcaatctcgttgctcatcttaacatgcatttactcccataaaatcatgtatatattttgtttcctttttgtgtagtttatgaccgtaaatgt |
46685143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University