View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9547_12 (Length: 331)
Name: NF9547_12
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 32746523 - 32746206
Alignment:
| Q |
14 |
gatgaacaactcattcacaggaactcttgagcttccaactttcaaacatggtttattggacctacaaatttcaaataacaagattggtagtcaactacaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32746523 |
gatgaacaactcattcacaggaactcttgagcttccaactttcaaacatggtttattggacctacaaatttcaaataacaagattggtagtcaactacaa |
32746424 |
T |
|
| Q |
114 |
gagaatataggtaagatatttccaattcttaattatttaaacctatctaaaaatagttttgagggaatccttccatcatccattggtgaaatgcaaacaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32746423 |
gagaatataggtaagatatttccaattcttaattatgtaaacctatctaaaaatagttttgagggaatccttccatcatccattggtgaaatgcaaacaa |
32746324 |
T |
|
| Q |
214 |
taaggactctggacttgtcgaataacaacttctctggagaatttagtagccatttgatctctaatttgacctcattgagactgttgaagctatctcacaa |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32746323 |
taaagactctggacttgtcgaataacaacttctctggagaatttagtagccatttgatctctaatttgacctcattgagactgttgaagctatctcacaa |
32746224 |
T |
|
| Q |
314 |
tagtttccatggacctgt |
331 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32746223 |
tagtttccatggacctgt |
32746206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 4913515 - 4913202
Alignment:
| Q |
14 |
gatgaacaactcattcacaggaactcttgagcttccaactttcaaacatggtttattggacctacaaatttcaaataacaagattggtagtcaactacaa |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4913515 |
gatgaataactcattcacaggaactcttgagcttccaactttcaaacatggtttattggacctacaaatttcaaataacaagattggtggtcaactacaa |
4913416 |
T |
|
| Q |
114 |
gagaatataggtaagatatttccaattcttaattatttaaacctatctaaaaatagttttgagggaatccttccatcatccattggtgaaatgcaaacaa |
213 |
Q |
| |
|
||| ||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4913415 |
gaggatataggtaagatatttccaaatctttattatgtaaacctatctaagaatagttttgagggaattcttccatcatccattggtgaaatgcaaacaa |
4913316 |
T |
|
| Q |
214 |
taaggactctggacttgtcgaataacaacttctctggagaatttagtagccatttgatctctaatttgacctcattgagactgttgaagctatctcacaa |
313 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
4913315 |
taaggactttggacttatccaataacaacttctctggagagcttagtagccatttgatctccaatttgacctcattgagacttctgaggctatctcacaa |
4913216 |
T |
|
| Q |
314 |
tagtttccatggac |
327 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4913215 |
tagtttccatggac |
4913202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 182 - 327
Target Start/End: Complemental strand, 2126645 - 2126500
Alignment:
| Q |
182 |
ccttccatcatccattggtgaaatgcaaacaataaggactctggacttgtcgaataacaacttctctggagaatttagtagccatttgatctctaatttg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||| | | ||||| ||||| |||||| |
|
|
| T |
2126645 |
ccttccatcatccattggtgaaatgcaaaaaataaggactcttgacttgtcaaataacaacttctctggagaacttactggtcatttcatctccaatttg |
2126546 |
T |
|
| Q |
282 |
acctcattgagactgttgaagctatctcacaatagtttccatggac |
327 |
Q |
| |
|
|||||||||| ||| ||| | ||||||| || ||||||||||||| |
|
|
| T |
2126545 |
acctcattgatactaatgaggatatctcataacagtttccatggac |
2126500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 2126786 - 2126666
Alignment:
| Q |
14 |
gatgaacaactcattcacaggaactcttgagcttccaactttcaaacatggtttattggacctacaaatttcaaataacaagattggtagtcaactacaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||| ||||| |||||| |||| || ||| |
|
|
| T |
2126786 |
gatgaacaactcattcacaggaactcttcagcttccaactttcaaacatggattattggacttgcaaatttcaaacaacaaaattggtggtcagctccaa |
2126687 |
T |
|
| Q |
114 |
gagaatataggtaagatattt |
134 |
Q |
| |
|
||| |||||||| || ||||| |
|
|
| T |
2126686 |
gagcatataggtgaggtattt |
2126666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University