View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_14 (Length: 323)
Name: NF9547_14
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_14 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 22080064 - 22080160
Alignment:
| Q |
25 |
catcactaagactacatcaagaaatgttggaactaaaagaacattgttggatatagtttaaaaaataaccatctaaaatacataatgtttttcagttg |
122 |
Q |
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| T |
22080064 |
catcactaagactacatcaaaaaatgttggaactaaaagaacat-gttggatatagtttaaaaaataaccatctaaaatacataatgtttttcagttg |
22080160 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 22080342 - 22080416
Alignment:
| Q |
198 |
caaactataaattctaaacatgggaagaacaaaaactcatcagaaacaaccaaacctgtacatggtaatttattt |
272 |
Q |
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| T |
22080342 |
caaactataaattctaaacatgtgaagaacaaaaactcctcagaaacaaccaaacctgtacatggtaatttattt |
22080416 |
T |
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