View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9547_2 (Length: 683)

Name: NF9547_2
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9547_2
NF9547_2
[»] chr8 (2 HSPs)
chr8 (426-599)||(12933811-12933984)
chr8 (449-486)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (426-599)||(28608621-28608794)
chr4 (426-576)||(14177081-14177231)
chr4 (434-487)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (419-456)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (419-456)||(796698-796735)
chr6 (419-456)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (419-456)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 426 - 599
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
Q  426 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 524  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  525 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 599  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 12933984  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  449 catggagatttggaagaggagatttatatggagcaacc 486  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 426 - 599
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
Q  426 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 524  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  525 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 599  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 28608621  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 576
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  426 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 524  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  525 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 576  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 487
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  434 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 487  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  419 gagcagttggatgtgaaaactgcatttcttcatggaga 456  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  419 gagcagttggatgtgaaaactgcatttcttcatggaga 456  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  419 gagcagttggatgtgaaaactgcatttcttcatggaga 456  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  419 gagcagttggatgtgaaaactgcatttcttcatggaga 456  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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