View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_4 (Length: 503)
Name: NF9547_4
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_4 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 30 - 430
Target Start/End: Original strand, 32959154 - 32959561
Alignment:
| Q |
30 |
gttatgattgggtgtattttgttttggaacaggttaatggggaaagttgcatctgataagtgtcacaagtgggtctttaaagaaccaacagaatgtgaac |
129 |
Q |
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| T |
32959154 |
gttatgattgggtgtattttgttttggaacaggttgatggggaaagttgcatctgataagtgtcacaagtgggtctttaaagaaccaacagaatgtgaac |
32959253 |
T |
|
| Q |
130 |
ccaatatctctaactactggcagagttcatttgatgctgtatgcttttttcaactctcttctacatccaatcacacttctacttttctc-catctttcac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
32959254 |
ccaatatctctaactactggcagagttcatttgatgctgtatgcttttttcaactctcttctacatccaatcacacttctacttctctctcatctttcac |
32959353 |
T |
|
| Q |
229 |
ttgtctatgtctaagtgcttgataagaatcaccacgagttttgcaaaatcacggtgttaccgttcatttattgaagtttgaaagtttaatttttatctaa |
328 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32959354 |
ttgtctatgtctaagtacttgataagaatcaccgcgagttttgcaaaatcacggtgttaccgttcatttattgaagtttgaaagtttaatttttatctaa |
32959453 |
T |
|
| Q |
329 |
attacgacgactcactg------tgattttgattctgattctgaccgactcaacatatatagatggagactttacattattattacattccaatcaagta |
422 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32959454 |
attacgacgactcactgtgattctgattctgattctgattctgaccgactcaacatatatagatggagactttacattattattacattccaatcaagta |
32959553 |
T |
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| Q |
423 |
ttaaattg |
430 |
Q |
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| T |
32959554 |
ttaaattg |
32959561 |
T |
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