View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_5 (Length: 488)
Name: NF9547_5
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 24 - 488
Target Start/End: Complemental strand, 46587964 - 46587499
Alignment:
| Q |
24 |
tcatcagaggcaaagtaataaggcttcaactgattcagctcaatctttatcccctcaccaccaccttgttcagcactaccaagcaactttgctcctctaa |
123 |
Q |
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| T |
46587964 |
tcatcagaggcaaagtaataaggcttcaattgattcagctcaatctttatcccctcaccaccaccttgatcagcactaccaagcaactttgctcctctaa |
46587865 |
T |
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| Q |
124 |
attcacacgtcgtgtaactccacatattcggtagcaagtaaacgctgggaacaaccgtggaatttcctgtagggggatacttgaacactgcattatttac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46587864 |
attcacacgtcgtgtaactccacatattcggtagcaagtaaacgctgggaacaaccgtggaatttcctgtagggggatacttgaacactgcattatttac |
46587765 |
T |
|
| Q |
224 |
gtatgcacaaaccaaaattaatccatcaatcaaatgatgaagaaaaaatatgtatatatgcgcaaacaatggacacacagcgacatttgataataatttg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46587764 |
gtatgcacaaaccaaaattaatccatcaatcaaatgatgaagaaaaaatatgtatatatgcgcaaacaatggacacacagcgacctttgataataatttg |
46587665 |
T |
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| Q |
324 |
-nnnnnnntcaaagtgattaaatataattaaatgcgttggtgtcgtgttagtgtcnnnnnnnnnnnnntgttaattga-tatttgtgatgatacataccc |
421 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
46587664 |
aaaaaaaatcaaagtgattaaatataattaaatgtgttggtgttgtgttagtgtc-aaaaaacaaaaatgttaattgattatttgtgatgatacataccc |
46587566 |
T |
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| Q |
422 |
aatgtgtcatttatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgcc |
488 |
Q |
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| T |
46587565 |
aatgtgtcatttatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgcc |
46587499 |
T |
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