View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_7 (Length: 395)
Name: NF9547_7
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_7 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 6559741 - 6559406
Alignment:
| Q |
12 |
acatcatcacttaaaagactacaataccaacagatatacatatttaaacatgaacaagcatatggataaacaccgaggaacatacatgaccatttcctca |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
6559741 |
acattatcacttaaaagactacaataccaacagatatacatatttaaacatgaacaagcatatggataaacaccgaggaacgtacatgaccgtttcctca |
6559642 |
T |
|
| Q |
112 |
caaacatccttggcggaagaaacaagtgagtaaaacttgttgaagtcgaggggtgagaaagaacaagagacgaccaaaaatgaaaaataggtctcaacaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
6559641 |
caaacatccttggcggaagaaacaagtgagtaaaacttgttgaagtcgaggggtgagaaagaacaagagatgaccaaaaatgaaaaagaggtctcaacaa |
6559542 |
T |
|
| Q |
212 |
gaaaaaagaagacgactttggcgataggaacaagggttttttcgcaatagagttgagaaatatagcaaattgtctaactatccggcttaaaacatacgtt |
311 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6559541 |
gaaaaaagaagacgactttggcgataggaataagggttttttcgcaatagagttgagaaatatagcaaattgtctaactatccggcttaaaacatacgtt |
6559442 |
T |
|
| Q |
312 |
ttcaacctttttgaatcatttgaagtcggttttgta |
347 |
Q |
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||||||||||||| | |||||||||||||||||||| |
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| T |
6559441 |
ttcaacctttttgcaccatttgaagtcggttttgta |
6559406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 367 - 395
Target Start/End: Complemental strand, 6559394 - 6559366
Alignment:
| Q |
367 |
ccttgcaaaaatgtcattgtgctcatgtt |
395 |
Q |
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| T |
6559394 |
ccttgcaaaaatgtcattgtgctcatgtt |
6559366 |
T |
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