View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_8 (Length: 383)
Name: NF9547_8
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_8 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 7095976 - 7095640
Alignment:
| Q |
18 |
tggacatcatcaatattggatagactctaatacatattagaattttggttggacctaactcaaccttatcgagccgtatcccaatctggaactctttaac |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7095976 |
tggacatcacaaatattggatagactctaatacatattagaattttggttggacctaactcaaccttatcgagccgtatcccaatctagaactctttaac |
7095877 |
T |
|
| Q |
118 |
aaaagtttaaaatattcaatcaaaacagaccctaaaagagtagtaataatttagtnnnnnnnnggaagcaattagttagttactagtactacctttgatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7095876 |
aaaagtttaaaatattcaatcaaaacagaccctaaaagagtagtaataatttagtaaaaaaaaggaagcaattagttagttactagtactacctttgatt |
7095777 |
T |
|
| Q |
218 |
tgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatctttcatcaattcaatct |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095776 |
tgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatctttcatcaattcaatct |
7095677 |
T |
|
| Q |
318 |
tcaacttatttaaaggttcatccattcccatgcatac |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7095676 |
tcaacttatttaaaggttcatccattcccatgcatac |
7095640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 207 - 345
Target Start/End: Original strand, 6774602 - 6774740
Alignment:
| Q |
207 |
tacctttgatttgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatctttcat |
306 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| | ||||| |
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| T |
6774602 |
tacctttgatttgtggttcccagcagagcttcttagcaagagtgcttttaccagatccacccaaaccagtcaaaacaagtacagaagcacccttcttcat |
6774701 |
T |
|
| Q |
307 |
caattcaatcttcaacttatttaaaggttcatccattcc |
345 |
Q |
| |
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|||||||| |||||||||||| ||||| ||||||||||| |
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| T |
6774702 |
caattcaaacttcaacttattcaaaggctcatccattcc |
6774740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 6740472 - 6740590
Alignment:
| Q |
205 |
actacctttgatttgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatctttc |
304 |
Q |
| |
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|||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
6740472 |
actacctttgatttcttgttcccagcagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaagcaccatccttc |
6740571 |
T |
|
| Q |
305 |
atcaattcaatcttcaact |
323 |
Q |
| |
|
|||||||||| |||||||| |
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| T |
6740572 |
atcaattcaaccttcaact |
6740590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 229 - 354
Target Start/End: Original strand, 6749557 - 6749683
Alignment:
| Q |
229 |
acagagcttcttagcaagagtggtttt-accagatccacccaaaccagtcaaaacaagcacagaaacaccatctttcatcaattcaatcttcaacttatt |
327 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| |
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| T |
6749557 |
acagagcttcttggcaagagtggtttttaccagatccacccaaaccagtcaaaaaaagtacagaaacaccatccttcatcaactcaatcttcaacttatt |
6749656 |
T |
|
| Q |
328 |
taaaggttcatccattcccatgcatac |
354 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
6749657 |
caaaggttcatccattcccatgcatac |
6749683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 204 - 348
Target Start/End: Original strand, 6717322 - 6717466
Alignment:
| Q |
204 |
tactacctttgatttgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatcttt |
303 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
6717322 |
tactacctttgatttgtggattccaacaaagcttcttagcaagagtgcttttaccagatccacctaaaccagtcaaaacaagtacagaaacaccatcttt |
6717421 |
T |
|
| Q |
304 |
catcaattcaatcttcaacttatttaaaggttcatccattcccat |
348 |
Q |
| |
|
|| |||| ||||||||||||||| ||||| ||||| | |||||| |
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| T |
6717422 |
caataattgaatcttcaacttattcaaaggctcatcaactcccat |
6717466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 6725377 - 6725489
Alignment:
| Q |
211 |
tttgatttgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatctttcatcaat |
310 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
6725377 |
tttgattagtggatcacaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaagcaccatccttcatcaat |
6725476 |
T |
|
| Q |
311 |
tcaatcttcaact |
323 |
Q |
| |
|
|||| |||||||| |
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|
| T |
6725477 |
tcaaccttcaact |
6725489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 6731857 - 6731973
Alignment:
| Q |
207 |
tacctttgatttgtggttcccaacagagcttcttagcaagagtggttttaccagatccacccaaaccagtcaaaacaagcacagaaacaccatctttcat |
306 |
Q |
| |
|
|||||| ||||||||| |||||| | || ||| | |||||||| |||| |||| |||||||||||||||||| || |||||||||||||| || | |
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| T |
6731857 |
taccttggatttgtggatcccaagaaaggttcatttgaagagtgggtttaacagaagcacccaaaccagtcaaaagaaacacagaaacaccatacttgag |
6731956 |
T |
|
| Q |
307 |
caattcaatcttcaact |
323 |
Q |
| |
|
||| ||||||||||||| |
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| T |
6731957 |
caactcaatcttcaact |
6731973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 6762232 - 6762282
Alignment:
| Q |
283 |
aagcacagaaacaccatctttcatcaattcaatcttcaacttatttaaagg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||| ||||| |
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|
| T |
6762232 |
aagcacagaaacaccatctttcatcaatttaaccttcaaattattcaaagg |
6762282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 38069569 - 38069605
Alignment:
| Q |
50 |
catattagaattttggttggacctaactcaaccttat |
86 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| |
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|
| T |
38069569 |
catattagaatttgggttgggcctaactcaaccttat |
38069605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 1920276 - 1920244
Alignment:
| Q |
54 |
ttagaattttggttggacctaactcaaccttat |
86 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
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| T |
1920276 |
ttagaattttggttgggcctaactcaaccttat |
1920244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 347165 - 347129
Alignment:
| Q |
49 |
acatattagaattttggttggacctaactcaacctta |
85 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |
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|
| T |
347165 |
acatattagaatttgggttggccctaactcaacctta |
347129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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