View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_9 (Length: 364)
Name: NF9547_9
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_9 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 159 - 337
Target Start/End: Original strand, 6175579 - 6175753
Alignment:
| Q |
159 |
gatattattgtggcgcgtggggtgttggtgatagtgagtagcgtgaaatgatatgatacaaaacccgcacacaaatctttcctccataccatgtccatgt |
258 |
Q |
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| T |
6175579 |
gatattattgtggcgcgtggggtgttggtgatagtgagtagcgtgaaatgatatgatacaaaacccgcacacaaatctttcctccataccatgtccatgt |
6175678 |
T |
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| Q |
259 |
ccatgtccttctcttcccattccatgccatggatttgtgaaagtatcatcaactaactagttatagttgttgcataatg |
337 |
Q |
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| T |
6175679 |
ccatgtccttctcttcccattccatgccatggatttgtgaaagtatcatc----aactagttatagttgttgcataatg |
6175753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 6174906 - 6175020
Alignment:
| Q |
25 |
catcaaatatcaatatactcaaaattacttccttcgtgttatactatatgacacaattaactttgtcacacatgccaatgtgcaattttgattttaaata |
124 |
Q |
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| T |
6174906 |
catcaaatatcaatatactcaaaattacttccttcgtgttatactatatgacacaattaactttgtcacacatgccaatgtgcaattttgattttaaata |
6175005 |
T |
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| Q |
125 |
tatttaataatttat |
139 |
Q |
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| T |
6175006 |
tatttaataatttat |
6175020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 23591208 - 23591239
Alignment:
| Q |
108 |
aattttgattttaaatatatttaataatttat |
139 |
Q |
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| T |
23591208 |
aattttgattttaaatatatttaataatttat |
23591239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 23591476 - 23591507
Alignment:
| Q |
108 |
aattttgattttaaatatatttaataatttat |
139 |
Q |
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| T |
23591476 |
aattttgattttaaatatatttaataatttat |
23591507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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