View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9547_low_2 (Length: 750)

Name: NF9547_low_2
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9547_low_2
NF9547_low_2
[»] chr3 (1 HSPs)
chr3 (21-737)||(46587499-46588217)


Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 21 - 737
Target Start/End: Original strand, 46587499 - 46588217
Alignment:
Q  21 ggcgtgcaggcactaactacactcaatgggccatcaaaaatagccccttccaaataaatgacacattgggtatgtatcatcacaaata-tcaattaacan 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  46587499 ggcgtgcaggcactaactacactcaatgggccatcaaaaatagccccttccaaataaatgacacattgggtatgtatcatcacaaataatcaattaacat 46587598  T
Q  120 nnnnnnnnnnnngacactaacacgacaccaacgcatttaattatatttaatcactttgannnnnnn-caaattattatcaaatgtcgctgtgtgtccatt 218  Q
                ||||||||||| |||||||| ||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||||    
T  46587599 ttttgtttttt-gacactaacacaacaccaacacatttaattatatttaatcactttgattttttttcaaattattatcaaaggtcgctgtgtgtccatt 46587697  T
Q  219 gtttgcgcatatatacatattttttcttcatcatttgattgatggattaattttggtttgtgcatacgtaaataatgcagtgttcaagtatccccctaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587698 gtttgcgcatatatacatattttttcttcatcatttgattgatggattaattttggtttgtgcatacgtaaataatgcagtgttcaagtatccccctaca 46587797  T
Q  319 ggaaattccacggttgttcccagcgtttacttgctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaagttgcttggtagtgctgaac 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46587798 ggaaattccacggttgttcccagcgtttacttgctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaagttgcttggtagtgctgatc 46587897  T
Q  419 aaggtggtggtgaggggataaagattgagctgaatcagttgaagccttattactttgcctctgatgaaggtaatgcctatgactgtattgctggactcac 518  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46587898 aaggtggtggtgaggggataaagattgagctgaatcaattgaagccttattactttgcctctgatgaaggcaatgcctatgactgtattgctggactcac 46587997  T
Q  519 caagttcattgctgttccatctacacgttccttttaatttagccctcatggcccaattgaatcaagttttttccttttaaggtagttgaattcaatatat 618  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  46587998 caagttcattgctgttccatctacacgttccttttaatttaaccctcatggcccaattgaatcaagttatttccttttaaggtagttgaattcaaaatat 46588097  T
Q  619 aaataaaatggatggtttcaatctgttttttctttcctgaagtatcgaaagnnnnnnnnttatgttttttattgtggtttgtg-tacctagaaagaaatg 717  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||        |||||||||||||||||||||||| |||||||| | | | |    
T  46588098 aaataaaatggatggtttccatctgttttttctttcctggagtatcgaaagaaaaaaaattatgttttttattgtggtttgtgctacctagataaatacg 46588197  T
Q  718 atgatgtatttttgtctctg 737  Q
    ||||||||||||||||||||    
T  46588198 atgatgtatttttgtctctg 46588217  T

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