View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_low_3 (Length: 346)
Name: NF9547_low_3
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 422405 - 422098
Alignment:
| Q |
20 |
ctaatgtcgtttcacactgacctgttctggtaatcaacattgtctaatgagtgttcaaccatcttatatatttaggcgatcttcagataaacgacaactt |
119 |
Q |
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| T |
422405 |
ctaatgtcgtttcacactgacctgttctggtaatcaacattgtctaatgagtgttcaaccatcttatatatttaggcgatcttcagataaacaacaactt |
422306 |
T |
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| Q |
120 |
aattaagtttaagtgtttacctgtatcatacgtgcttgagaataaaatataagtgcttacaaataagttatttttatcaaagcaagactttactctaaac |
219 |
Q |
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| T |
422305 |
aattaagt------gtttacctgtatcatacgtgcttgagaataaaatataagtgcttacaaataagttatttttatcaaagcaagactttactctaaac |
422212 |
T |
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| Q |
220 |
ctaaaaggacaaacggttggtgaaaatggagttgacagtgaacaaaatgggaggttagtgcttgcttacaaaatttagag--ttgtgttttttaagtaaa |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
422211 |
ctaaaaggacaaacgtttggtgaaaatggagttgacagtgaacaaaatgggaggctagtgcttgcttacaaaatttagagttttgtgttttttaagtaaa |
422112 |
T |
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| Q |
318 |
tcttaccgaaagag |
331 |
Q |
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| T |
422111 |
tcttaccgaaagag |
422098 |
T |
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