View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9547_low_4 (Length: 294)
Name: NF9547_low_4
Description: NF9547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9547_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 30271903 - 30272173
Alignment:
| Q |
8 |
ttggtgtttggggtgttgtgggggtagatattgccagcattaagcatcatcctatcagtcacctaatggaaaatgtgaagaaccaattataagtaacata |
107 |
Q |
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| T |
30271903 |
ttggtgtttggggtgttgtgggggtagatattgccagcattaagcatcatcctatcagtcacctaatggaaaatgtgaagaaccaattataagtaacata |
30272002 |
T |
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| Q |
108 |
aactttgtgacaatagaaaactccatcactaaattgtagagtaaaaaggttggattcaaatacatgttttgcagcatgagctttaaggccatcaatccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272003 |
aactttgtgacaatagaaaactccatcactaaattgtagagtaaaaaggttggattcaaatacatgttttgcagcatgagctttaaggccatcaatccaa |
30272102 |
T |
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| Q |
208 |
ctataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctgcatgaaaatgaatgtttc |
278 |
Q |
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| T |
30272103 |
ctataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctgcatgaaaatgaatgtttc |
30272173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 102 - 276
Target Start/End: Complemental strand, 29359515 - 29359342
Alignment:
| Q |
102 |
aacataaactttgtgacaatagaaaactccatcactaaattgtagagtaaaaaggttggattcaaatacatgttttgcagcatgagctttaaggccatca |
201 |
Q |
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| T |
29359515 |
aacacaaattttgtgacaatagaaaaatccatcactaaattgtagagtaaaaaggttggattcaa-tacatgttttgcacaatgagctttaaggtcgtca |
29359417 |
T |
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| Q |
202 |
atccaactataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctgcatgaaaatgaatgtt |
276 |
Q |
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| T |
29359416 |
atccaactataaccaacaccattactgaattgttccttctgcctgcataaaatgtgctgcatgaaaatgaatgtt |
29359342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 29360315 - 29360224
Alignment:
| Q |
8 |
ttggtgtttggggtgttgtgggggtagatattgccagcattaagcatcatcctatcagtcacctaatggaaaatgtgaagaaccaattataa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |
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| T |
29360315 |
ttggtgtttggggtgttgtgggggtagatattgccagcattaagcatcattctatcagtcacctattggaaaatgtcaagaaccaattataa |
29360224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 25964718 - 25964815
Alignment:
| Q |
168 |
tacatgttttgcagcatgagctttaaggccatcaatccaactataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctgcatga |
265 |
Q |
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| T |
25964718 |
tacatgttttgcagcatggtccttaattccatcaatccagccatagccaactccatcactgaactgttccttctgtctatataaaatgtgctgcatga |
25964815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 39546063 - 39545999
Alignment:
| Q |
196 |
ccatcaatccaactataaccaacaccatcactgaattgttccttctgcctgtataaaatgtgctg |
260 |
Q |
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| T |
39546063 |
ccatcaatccaactgtatccgacaccatcactgaactgttccttctgcctgtacaatatgtgctg |
39545999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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